Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30289
(713 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22055-1|AAA80488.1| 885|Homo sapiens 100 kDa coactivator protein. 66 1e-10
BT009785-1|AAP88787.1| 910|Homo sapiens EBNA-2 co-activator (10... 66 1e-10
BC017180-1|AAH17180.3| 910|Homo sapiens staphylococcal nuclease... 66 1e-10
AB209510-1|BAD92747.1| 964|Homo sapiens EBNA-2 co-activator var... 66 1e-10
AK095436-1|BAC04549.1| 159|Homo sapiens protein ( Homo sapiens ... 32 2.3
AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with holl... 32 2.3
BC126459-1|AAI26460.1| 257|Homo sapiens chromosome 10 open read... 30 7.2
AL121928-10|CAI12523.1| 257|Homo sapiens novel protein protein. 30 7.2
AK024458-1|BAB15748.1| 270|Homo sapiens FLJ00050 protein protein. 30 7.2
AK024342-1|BAB14892.1| 257|Homo sapiens protein ( Homo sapiens ... 30 7.2
>U22055-1|AAA80488.1| 885|Homo sapiens 100 kDa coactivator protein.
Length = 885
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 36 LIKDGLVLVEQVRDSRLATLMAEYRAAQEHAKSSRLNLWRHGDITEDDAVEFGVRR 203
L+K+GLV+VE ++ + ++ EY AQE AKS+RLNLWR+GD DDA EFG R
Sbjct: 830 LVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFGYSR 885
>BT009785-1|AAP88787.1| 910|Homo sapiens EBNA-2 co-activator (100kD)
protein.
Length = 910
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 36 LIKDGLVLVEQVRDSRLATLMAEYRAAQEHAKSSRLNLWRHGDITEDDAVEFGVRR 203
L+K+GLV+VE ++ + ++ EY AQE AKS+RLNLWR+GD DDA EFG R
Sbjct: 855 LVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFGYSR 910
>BC017180-1|AAH17180.3| 910|Homo sapiens staphylococcal nuclease and
tudor domain containing 1 protein.
Length = 910
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 36 LIKDGLVLVEQVRDSRLATLMAEYRAAQEHAKSSRLNLWRHGDITEDDAVEFGVRR 203
L+K+GLV+VE ++ + ++ EY AQE AKS+RLNLWR+GD DDA EFG R
Sbjct: 855 LVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFGYSR 910
>AB209510-1|BAD92747.1| 964|Homo sapiens EBNA-2 co-activator variant
protein.
Length = 964
Score = 66.1 bits (154), Expect = 1e-10
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 36 LIKDGLVLVEQVRDSRLATLMAEYRAAQEHAKSSRLNLWRHGDITEDDAVEFGVRR 203
L+K+GLV+VE ++ + ++ EY AQE AKS+RLNLWR+GD DDA EFG R
Sbjct: 909 LVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFGYSR 964
>AK095436-1|BAC04549.1| 159|Homo sapiens protein ( Homo sapiens
cDNA FLJ38117 fis, clone D3OST2003797. ).
Length = 159
Score = 31.9 bits (69), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 142 STCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPR 246
++CGG SP T + C+ SC A PP R R
Sbjct: 78 NSCGGCTGSPNTASPPTSCLNSCRVSATFPPGRAR 112
>AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with
holliday junction DNA helicase RUVB like protein.
Length = 1184
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 255 CGCAWAMWWRQRRGRTASDAPRIPLHRPR*CH----RAATS*VASSWRAPER 112
CG W + RG + ++PR PL +PR H RA A+ WR P R
Sbjct: 122 CGGQWRAPQDRTRGLRSRNSPRPPLAQPRLRHANQWRAPPGTPAADWRRPAR 173
>BC126459-1|AAI26460.1| 257|Homo sapiens chromosome 10 open reading
frame 95 protein.
Length = 257
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 PSIAPLRSTPRARDSTC--GGTVTSPRTMQWNSGCVASCTPPALTPPHRPRTSA 255
P+ AP ++P A S+C S T W+ C A T P +PR++A
Sbjct: 197 PTPAPTCASPSAAASSCCRRRRACSSPTTAWSGACGAGPTAATAAQPGKPRSAA 250
>AL121928-10|CAI12523.1| 257|Homo sapiens novel protein protein.
Length = 257
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 PSIAPLRSTPRARDSTC--GGTVTSPRTMQWNSGCVASCTPPALTPPHRPRTSA 255
P+ AP ++P A S+C S T W+ C A T P +PR++A
Sbjct: 197 PTPAPTCASPSAAASSCCRRRRACSSPTTAWSGACGAGPTAATAAQPGKPRSAA 250
>AK024458-1|BAB15748.1| 270|Homo sapiens FLJ00050 protein protein.
Length = 270
Score = 30.3 bits (65), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 97 WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVAS 207
WP P+RS +TC GT+ T W G + S
Sbjct: 230 WPPCFPVRSGLVLHKNTCAGTLCHTSTQTWMLGSMVS 266
>AK024342-1|BAB14892.1| 257|Homo sapiens protein ( Homo sapiens
cDNA FLJ14280 fis, clone PLACE1005584, weakly similar to
TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0. ).
Length = 257
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 PSIAPLRSTPRARDSTC--GGTVTSPRTMQWNSGCVASCTPPALTPPHRPRTSA 255
P+ AP ++P A S+C S T W+ C A T P +PR++A
Sbjct: 197 PTPAPTCASPSAAASSCCRRRRACSSPTTAWSGACGAGPTAATAAQPGKPRSAA 250
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,500,348
Number of Sequences: 237096
Number of extensions: 2068784
Number of successful extensions: 4922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4922
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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