Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30289
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 50 1e-06
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 2.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.5
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 28 5.8
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 28 5.8
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 28 5.8
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 28 7.6
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +3
Query: 30 QNLIKDGLVLVEQVRDSRLATLMAEYRAAQEHAKSSRLNLWRHGDITEDD 179
++LI +GL L + R+ RL TL+ +Y +E A+ SR N+W +GD T +D
Sbjct: 864 KSLIAEGLALADHRREPRLQTLVNDYNTTEEVARKSRKNIWEYGDFTGND 913
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 100 PSIAPLRST-PRARDSTCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPRT 249
P++ P+ +T P ST T T+ T Q TP +TP RP T
Sbjct: 676 PTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRPVT 726
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 100 PSIAPLRST-PRARDSTCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPRT 249
P++ P+ +T P ST T T+ T Q TP +TP RP T
Sbjct: 732 PTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRPVT 782
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 100 PSIAPLRST-PRARDSTCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPRT 249
P++ P+ +T P ST T T+ T Q TP +TP RP T
Sbjct: 555 PTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRPVT 605
>Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical
protein F15G9.5 protein.
Length = 272
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 492 CCGTPSAAVFTAHHRNVLRHN 430
CCG AHH N+LR N
Sbjct: 81 CCGNSEHQCMAAHHHNILRPN 101
>U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical
protein R08E3.4a protein.
Length = 447
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 154 GTVTSPRTMQWNSGCVASCTPPALTPPHRPRTS 252
G +++ +T++W G +S P TPP P S
Sbjct: 37 GEMSNSQTIEWGDGIQSSTPSPRSTPPSDPTPS 69
>U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical
protein R08E3.4b protein.
Length = 480
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 154 GTVTSPRTMQWNSGCVASCTPPALTPPHRPRTS 252
G +++ +T++W G +S P TPP P S
Sbjct: 37 GEMSNSQTIEWGDGIQSSTPSPRSTPPSDPTPS 69
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 97 WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVA 204
+PSI + R+ G + SP +W + C+A
Sbjct: 345 FPSIGNSSNAQRSNQQQVAGLIPSPELQEWRTACLA 380
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 97 WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVA 204
+PSI + R+ G + SP +W + C+A
Sbjct: 686 FPSIGNSSNAQRSNQQQVAGLIPSPELQEWRTACLA 721
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 97 WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVA 204
+PSI + R+ G + SP +W + C+A
Sbjct: 345 FPSIGNSSNAQRSNQQQVAGLIPSPELQEWRTACLA 380
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 97 WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVA 204
+PSI + R+ G + SP +W + C+A
Sbjct: 686 FPSIGNSSNAQRSNQQQVAGLIPSPELQEWRTACLA 721
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 103 SIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVASCTPPALTPP 234
S AP+ PR + T+P T + +A+ PP + PP
Sbjct: 99 SSAPIVGAPRQGATPQAAPATTPATTSQHQQSIATPKPPVVRPP 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,349
Number of Sequences: 27780
Number of extensions: 307832
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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