Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30289
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69280.1 68414.m07943 expressed protein                             33   0.14 
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle...    32   0.33 
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    31   0.76 
At5g32621.1 68418.m03884 expressed protein contains Pfam profile...    29   3.1  
At5g03500.1 68418.m00306 transcriptional co-activator-related lo...    28   5.3  
At3g06080.2 68416.m00695 expressed protein identical to unknown ...    28   7.1  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    27   9.3  
At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf...    27   9.3  

>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 299 RGRCCRHLQWCRWHSADVRGRCG 231
           R +CC    WCRW S D    CG
Sbjct: 329 RLKCCPCFSWCRWPSCDYNSSCG 351


>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
            family protein contains Pfam domains PF00567: Tudor
            domain and PF00565: Staphylococcal nuclease homologue
          Length = 991

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 117  QEHAKSSRLNLWRHGDITEDD 179
            QE A+ SR+ +W++GDI  DD
Sbjct: 957  QEEARKSRIGIWQYGDIESDD 977


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
            family protein contains Pfam domains PF00567: Tudor
            domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 117  QEHAKSSRLNLWRHGDITEDDAVEFGVRR 203
            Q+ A+ SR  +W +GDI  DD     VR+
Sbjct: 953  QDEARKSRTGIWEYGDIQSDDEDNVPVRK 981


>At5g32621.1 68418.m03884 expressed protein contains Pfam profile
           PF04827: Protein of unknown function (DUF635)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 321 HSI--W*RMAWTMLSTSTVVQVAQCGCAWAMWWRQRRGRTASDAPRIPLH 178
           HSI  W + A T  + S ++++    C + +W R+R  R  S+  R P H
Sbjct: 538 HSILLWLKSASTSKNLSLIIKLIFQACVYLIW-RERNSRIHSNNSRTPSH 586


>At5g03500.1 68418.m00306 transcriptional co-activator-related low
           similarity to transcriptional co-activator CRSP33 [Homo
           sapiens] GI:4220890
          Length = 443

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 409 IANYDTCVVPEDITMVSSEHGSGRGAAT 492
           +  YDTCV   DI M   EH S  G  T
Sbjct: 310 VTGYDTCVPKIDIQMALCEHFSSCGEVT 337


>At3g06080.2 68416.m00695 expressed protein identical to unknown
           protein GB:AAF30301 from [Arabidopsis thaliana]
          Length = 469

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 APERRDTRPSMSPVGCHEPAPLTR 52
           A +R+D  PS+  +G H PAPL R
Sbjct: 399 AAQRKDGHPSLYYLGPHGPAPLHR 422


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -3

Query: 552 YVCKFKKYVFMNYARMLACKCCGTPSAAVFTAHHRNVLRHNTRIVIS 412
           Y   +     ++Y   L CKCC +P   ++  +H +  + N  +  S
Sbjct: 163 YAVAYNDGASLSYGNHLKCKCCASPLEKLY--YHCSTCKFNLNLTCS 207


>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 311

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 242 GRCGGVNAGGVQLATHPEFHCIVLGDVTVPPQVESRA--LGVLLSG 111
           G  GGV+ GG  +  H  F  + L    +PP     A  L + L+G
Sbjct: 162 GNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAG 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,250
Number of Sequences: 28952
Number of extensions: 281210
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)