Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30287
         (358 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1; Ac...    35   0.48 
UniRef50_A5BY14 Cluster: Putative uncharacterized protein; n=1; ...    31   5.9  
UniRef50_A5BG34 Cluster: Putative uncharacterized protein; n=2; ...    31   7.7  
UniRef50_P54401 Cluster: Tubulin gamma chain; n=3; Entamoeba his...    31   7.7  
UniRef50_Q99176 Cluster: Protein SRN2; n=3; Saccharomyces cerevi...    31   7.7  

>UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: TFII-like
           transcription factor - Mimivirus
          Length = 173

 Score = 34.7 bits (76), Expect = 0.48
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +3

Query: 171 INQLDSEFYE*LKCNQI--GIYCFLKYYCYSKNKNGKVNHHLW*DCYTQI---LNEINGI 335
           I QL   F +   C  I  GIY F K YC S N   ++   ++ DC   I   L + N  
Sbjct: 18  IEQLLEFFPKKKNCKDIEKGIYDFTKQYCKSDNSYLRLAQAIYIDCAKNIMFNLKDENNH 77

Query: 336 TIKKKKK 356
           TIKK KK
Sbjct: 78  TIKKIKK 84


>UniRef50_A5BY14 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1348

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 25  CYEYLIICLRKCMVYERAY*ETWQLCHFLVDK--KFGKVFLKESL*EYKKQSISLIVN 192
           C   L   L++C+  E+     W+ CHF+V+K    G V  ++ + E  K  I LIVN
Sbjct: 820 CLSNLETILQRCI--EKNLVLNWEKCHFMVEKGIVLGHVVSRKDI-EVDKAKIELIVN 874


>UniRef50_A5BG34 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1654

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 25  CYEYLIICLRKCMVYERAY*ETWQLCHFLVDK--KFGKVFLKESL*EYKKQSISLIVN 192
           C   L   L++C+  E+     W+ CHF+V+K    G V  ++ + E  K  I +IVN
Sbjct: 608 CLSNLETILQRCI--EKNLVLNWEKCHFMVEKGIVLGHVISRKGI-EVDKAKIEIIVN 662


>UniRef50_P54401 Cluster: Tubulin gamma chain; n=3; Entamoeba
           histolytica|Rep: Tubulin gamma chain - Entamoeba
           histolytica
          Length = 451

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -3

Query: 167 FLYSHRDSLRKTFPNFLSTKK*QSCQVSQYALS*TI---HFRKQIIKY 33
           +L + RD+LRK FP F  +K+   C + +YA + +I   H+   I KY
Sbjct: 394 YLQTDRDNLRK-FPEFEESKEIVKCVIEEYAKAESIEYSHYSYPIHKY 440


>UniRef50_Q99176 Cluster: Protein SRN2; n=3; Saccharomyces
           cerevisiae|Rep: Protein SRN2 - Saccharomyces cerevisiae
           (Baker's yeast)
          Length = 213

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 49  LRKCMVYERAY*ETWQLCHFLVDKKFGKVFLKESL*EYKKQ 171
           L  C + E  Y  +WQ  H    KK+G + LK+ L +  K+
Sbjct: 120 LENCRILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKK 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,373,365
Number of Sequences: 1657284
Number of extensions: 4823731
Number of successful extensions: 9781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9781
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)