Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30287
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   3.5  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    24   6.1  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    24   6.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.1  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    24   8.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   8.0  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 170 CFLYSHRDSLRKTFPNFLSTKK*QSCQVSQYAL 72
           C + SH D+L K    F+  +   SC++  YAL
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSCKL-LYAL 296


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 210 CNQIGIYCFLKYYCYSKNKNGKVNHHLW*DCYTQILNEING 332
           C   G + + + Y Y     GK  +++  DCY+ +   +NG
Sbjct: 90  CQSTGKW-YSQLYDYQNTFIGKQEYNILFDCYSYLKYNLNG 129


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 210 CNQIGIYCFLKYYCYSKNKNGKVNHHLW*DCYTQILNEING 332
           C   G + + + Y Y     GK  +++  DCY+ +   +NG
Sbjct: 90  CQSTGKW-YSQLYDYQNTFIGKQEYNILFDCYSYLKYNLNG 129


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 197  IKFTIKLIDCFLYSHRDSLRKTFPNFL 117
            I+ T+  ++CF    +D+L    P F+
Sbjct: 2104 IEVTLPCVECFFKYKKDALHTLLPGFM 2130


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 200 FIKFTIKLIDCFLY 159
           FIKF +K+I+ FLY
Sbjct: 237 FIKFKLKVINLFLY 250


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 100 CHFLVDKKFGKVFLKESL*EYKKQSISL 183
           C   VDK   K+ LK+ +  YKK S +L
Sbjct: 62  CFSSVDKNTEKLILKQQVLAYKKLSQNL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,006
Number of Sequences: 5004
Number of extensions: 23772
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)