Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30287
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 1.1
11_04_0026 - 12446179-12446399,12446604-12447303 27 3.3
01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498 27 3.3
11_04_0182 - 14597325-14597881,14598082-14598243,14598416-14598950 27 4.3
10_07_0004 - 11722867-11723532,11724778-11724825 27 4.3
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 27 4.3
07_02_0032 - 12037507-12038435,12038475-12038586,12038912-120391... 27 5.7
06_03_0017 - 15465831-15466043,15466091-15466249,15466664-154669... 27 5.7
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 27 5.7
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 27 5.7
01_05_0238 - 19711579-19712145,19712188-19712370 27 5.7
12_01_0543 - 4271380-4272218,4272258-4272873 26 7.6
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883... 26 7.6
08_02_0030 + 11380149-11380721,11380800-11381073,11381281-11382449 26 7.6
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 204 LKCNQIGIYCFLKYYCYSKNKNGKVNHHLW 293
LKCN I +YC +Y CYS +K + W
Sbjct: 296 LKCN-IWVYCPSEYGCYSPDKYEHKHQECW 324
>11_04_0026 - 12446179-12446399,12446604-12447303
Length = 306
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 232 VFLNITAIPKTKMAKLTITCGKIAIHK 312
VF N +P T++ KLT C + +HK
Sbjct: 260 VFNNKRPLPTTEVVKLTEQCSNLILHK 286
>01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498
Length = 401
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHKF 315
N +P T++ KLT C + +HKF
Sbjct: 280 NKRPLPTTEVVKLTEQCSNVILHKF 304
>11_04_0182 - 14597325-14597881,14598082-14598243,14598416-14598950
Length = 417
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P TK+ KLT C + +HK
Sbjct: 262 NKRPLPTTKLVKLTEECSNVILHK 285
>10_07_0004 - 11722867-11723532,11724778-11724825
Length = 237
Score = 27.1 bits (57), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P T++ KLT+ C + +HK
Sbjct: 83 NKRPLPTTEVVKLTLQCSNVILHK 106
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P T++ KLT C K+ +HK
Sbjct: 394 NKRPLPTTEVVKLTKQCSKVILHK 417
>07_02_0032 -
12037507-12038435,12038475-12038586,12038912-12039199,
12039395-12039622
Length = 518
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P TK+ KLT C + +HK
Sbjct: 294 NERPLPTTKVVKLTEQCSNVILHK 317
>06_03_0017 -
15465831-15466043,15466091-15466249,15466664-15466968,
15467083-15467324,15467818-15467825,15467954-15468418,
15468465-15468763,15468968-15469204,15469297-15469519
Length = 716
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P T++AKLT C I +HK
Sbjct: 183 NKRPLPTTEVAKLTEHCSNIILHK 206
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P T+M KLT C + +HK
Sbjct: 143 NKRPLPTTEMVKLTEQCSNVILHK 166
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHK 312
N +P TK+ KLT C I +HK
Sbjct: 208 NKRPLPTTKVVKLTEHCSNIILHK 231
>01_05_0238 - 19711579-19712145,19712188-19712370
Length = 249
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 160 YKKQSISL---IVNFMXXXXVIK*VSIVFLNITAIPKTKMAKLTITCGKIAIHK 312
+KK SI + +++ M + + + N +P T++ KLT C K +HK
Sbjct: 57 FKKPSIHIHVMLLDTMQVSTYARYLKDILNNKRPLPTTEVVKLTEECSKAILHK 110
>12_01_0543 - 4271380-4272218,4272258-4272873
Length = 484
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 181 LIVNFMXXXXVIK*VSIVFLNITAIPKTKMAKLTITCGKIAIHK 312
L+++ M + + + N ++P T++ KLT C + +HK
Sbjct: 270 LLLDAMQVPTYARYLKDILNNKRSLPTTEVVKLTKQCSNVILHK 313
>11_02_0151 +
8837444-8837876,8838173-8839434,8839517-8839885,
8839963-8840223,8840230-8840442,8840602-8840967,
8841402-8841667,8842087-8842197,8842288-8842317,
8842444-8842465
Length = 1110
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 47 VCESVWFMKEHTEKPGN 97
VC S++F EHTE+P +
Sbjct: 523 VCVSIYFAFEHTERPSD 539
>08_02_0030 + 11380149-11380721,11380800-11381073,11381281-11382449
Length = 671
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 241 NITAIPKTKMAKLTITCGKIAIHKF 315
N P T++ KLT C + +HKF
Sbjct: 410 NKRPFPTTEVVKLTEHCSNVILHKF 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,995,501
Number of Sequences: 37544
Number of extensions: 108196
Number of successful extensions: 232
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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