Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30287
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              20   7.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 53   ESVWFMKEHTEKPGNFVTF*WIKSLERFFLKNLYENIKSNQ 175
            E +W + + TEK  + + + W    ER+   ++Y N++  Q
Sbjct: 1090 EEMWELID-TEKLTDRLPYPWTMDNERYVKVDMYMNLEGEQ 1129


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 240 KYYCYSKNKNGKVNH 284
           +Y C ++N+ GKV H
Sbjct: 496 EYSCMAENRAGKVTH 510


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 240 KYYCYSKNKNGKVNH 284
           +Y C ++N+ GKV H
Sbjct: 496 EYSCMAENRAGKVTH 510


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 276 LCHFCFW 256
           LC+FC W
Sbjct: 186 LCYFCIW 192


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 CFLKYYCYSKNKNGKVNHHL 290
           C L+ +     KNGK+ ++L
Sbjct: 74  CVLEKFNVMDKKNGKIRYNL 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,968
Number of Sequences: 438
Number of extensions: 1595
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)