Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30286
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   122   2e-29
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   118   4e-28
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.38 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   2.0  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   4.7  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   6.2  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.2  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   6.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   8.2  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  122 bits (294), Expect = 2e-29
 Identities = 53/76 (69%), Positives = 64/76 (84%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 206 MFQLPKLYAKLHYCVS 253
            + +PKLY KL YCVS
Sbjct: 61  EYTIPKLYIKLQYCVS 76



 Score = 37.5 bits (83), Expect = 8e-04
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 366
           AIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 78  AIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  118 bits (284), Expect = 4e-28
 Identities = 52/83 (62%), Positives = 66/83 (79%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + +PK+Y KL YCVS    A++
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARV 83



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 366
           AIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 78  AIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 107 RCVPKDKAIKKFVIRNIVEAAAVRDI 184
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 152  NIVEAAAVRDINDASVYPMFQLPKL-YAKLHYCVSSPSTAKLSGTD 286
            NIV+    R +ND   + +   P++ YA L++C   PS+  L+  D
Sbjct: 1482 NIVKFLGNRIMNDMREFVLLAFPQIQYALLNWC-QPPSSISLASID 1526


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 272 LSGTDRRKTEESVLLPRVTSLGT 340
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -1

Query: 187 VNISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRS 8
           +N   +R+   +PN   FDSL  + + R   +++G N++     +S   +  + ++N  S
Sbjct: 472 LNNFQQRKLTPLPNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNS 531

Query: 7   GE 2
            E
Sbjct: 532 SE 533


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +2

Query: 113 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY--AKLHYCVSSPSTAKLSGTD 286
           +PKDKA++    RN  +  A   I DA +    +  + +  +K     S     KL+   
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKP 226

Query: 287 RRKTEESVLLPRVTSLGTCHVHRQCKGSD 373
           +   ++   +P  T +    ++RQ   SD
Sbjct: 227 QVTAKDQNAMPS-TGISGFEINRQKDTSD 254


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 82  FNVTTSMLGASSITAL---TSHVSNLRSGE 2
           FN+ TS   +SS+T+    +SH+SN  + +
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQ 129


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -1

Query: 166 RFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASS 47
           + +DV + +L + +     P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 230 AKLHYCVSS--PSTAKLSGTDRRKTEESVLLPRVTSLGTC 343
           A L+Y V+   P+  K  G D +K +  +    +T   TC
Sbjct: 577 AALNYAVNEYVPTYRKTFGNDSKKIKNKITAEGITGSSTC 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,177
Number of Sequences: 5004
Number of extensions: 23590
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)