BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30284 (536 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac... 76 4e-15 SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 73 3e-14 SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 27 1.3 SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 1.3 SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 26 4.1 SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 9.5 >SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosaccharomyces pombe|chr 3|||Manual Length = 108 Score = 75.8 bits (178), Expect = 4e-15 Identities = 37/72 (51%), Positives = 47/72 (65%) Frame = +1 Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432 + GK YVY++ K RG +K+R IWG + RPHGNSG+VRA+F NLPA+ G Sbjct: 45 YLGKRVCYVYKSSKAV------RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFG 96 Query: 433 HRIRVMLYPSRI 468 +RVMLYPS I Sbjct: 97 SSLRVMLYPSNI 108 Score = 33.1 bits (72), Expect = 0.027 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 128 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259 P G RLY KA ++R H T+++K+EG + +A F L Sbjct: 2 PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYL 46 >SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 2|||Manual Length = 108 Score = 72.9 bits (171), Expect = 3e-14 Identities = 35/72 (48%), Positives = 47/72 (65%) Frame = +1 Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432 + GK +VY++ K P+ G +K+R IWG V+RPHGNSG VRA+F NLP + G Sbjct: 45 YLGKRICFVYKSNK--PVRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFG 96 Query: 433 HRIRVMLYPSRI 468 +RVMLYPS + Sbjct: 97 ASLRVMLYPSNV 108 Score = 33.9 bits (74), Expect = 0.015 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 128 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259 P G RLY KA ++R H T+L+K+EG + +A F L Sbjct: 2 PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYL 46 >SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 453 Score = 27.5 bits (58), Expect = 1.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 360 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASK 253 ++ P T LGFF T N P VH +M AS+ Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKASE 368 >SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizosaccharomyces pombe|chr 3|||Manual Length = 650 Score = 27.5 bits (58), Expect = 1.3 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 171 ISVVYATSTRTPLSSRLKEQKTVMMQSFCWQ 263 ++V YA T P S RLK + ++Q + WQ Sbjct: 262 MNVSYAFPTFPPYSDRLKRLISTLLQQYPWQ 292 >SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces pombe|chr 1|||Manual Length = 684 Score = 25.8 bits (54), Expect = 4.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 312 SGNWCPLLSSVHIDAMLASKKTASLRSFA 226 SGN+ P L+S+ ID + + K SLR + Sbjct: 380 SGNFIPSLNSIFIDNLNSFKNLDSLRDMS 408 >SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1473 Score = 24.6 bits (51), Expect = 9.5 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 362 PAHMATLAVSEPSSSLTSLPRLWDTEY 442 P L V EP +TSLPR WD Y Sbjct: 308 PTSTKRLTVLEP---ITSLPRKWDPLY 331 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,930,729 Number of Sequences: 5004 Number of extensions: 38961 Number of successful extensions: 102 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 222442660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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