Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30284
(536 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 109 5e-24
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 109 5e-24
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 109 5e-24
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 109 5e-24
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 109 5e-24
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 107 3e-23
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 71 3e-12
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.017
AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens ... 31 3.4
BC002758-1|AAH02758.1| 502|Homo sapiens adenosine deaminase, tR... 30 4.5
AK001687-1|BAA91837.1| 353|Homo sapiens protein ( Homo sapiens ... 30 4.5
AF125188-1|AAD48376.1| 502|Homo sapiens adenosine deaminase act... 30 4.5
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 30 6.0
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 109 bits (263), Expect = 5e-24
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+ GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 433 HRIRVMLYPSRI 468
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 109 bits (263), Expect = 5e-24
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+ GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 433 HRIRVMLYPSRI 468
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 109 bits (263), Expect = 5e-24
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+ GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 433 HRIRVMLYPSRI 468
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 109 bits (263), Expect = 5e-24
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+ GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 433 HRIRVMLYPSRI 468
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 109 bits (263), Expect = 5e-24
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+ GK C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIG 98
Query: 433 HRIRVMLYPSRI 468
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 107 bits (256), Expect = 3e-23
Identities = 50/72 (69%), Positives = 55/72 (76%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+ GK C YVY+AK T PGG K K R IWGKVTR HGNSG V AKF+SNLPA+A+G
Sbjct: 42 YLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIG 98
Query: 433 HRIRVMLYPSRI 468
HRIRVMLYPSRI
Sbjct: 99 HRIRVMLYPSRI 110
Score = 59.7 bits (138), Expect = 6e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ F L
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYL 43
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/58 (60%), Positives = 38/58 (65%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 426
+ GK C VY+AK T IPG K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 41 YLGKRCACVYKAKSNTMIPGS---KPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
Score = 51.2 bits (117), Expect = 2e-06
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFLL 259
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ F L
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYL 42
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.017
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 137 GRLYAKAVFTGYKRGLRNQ 193
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ44051 fis, clone TESTI4033433. ).
Length = 214
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 388 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQ-QKDC 245
HC C GG P P+ H AW + S + HRR+ CQ Q C
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQAQGSC 183
>BC002758-1|AAH02758.1| 502|Homo sapiens adenosine deaminase,
tRNA-specific 1 protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 303 WCPLLSSVHIDAMLASKKTASLRSFAPSTLRRAVFSCWLRRPRLY 169
W L +D K+ AS A STLR+ VF W+R P Y
Sbjct: 454 WPHSLRVQKLDTYQEYKEAASSYQEAWSTLRKQVFGSWIRNPPDY 498
>AK001687-1|BAA91837.1| 353|Homo sapiens protein ( Homo sapiens
cDNA FLJ10825 fis, clone NT2RP4001095, weakly similar to
DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1 (EC 3.5.-.-). ).
Length = 353
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 303 WCPLLSSVHIDAMLASKKTASLRSFAPSTLRRAVFSCWLRRPRLY 169
W L +D K+ AS A STLR+ VF W+R P Y
Sbjct: 305 WPHSLRVQKLDTYQEYKEAASSYQEAWSTLRKQVFGSWIRNPPDY 349
>AF125188-1|AAD48376.1| 502|Homo sapiens adenosine deaminase acting
on tRNA 1 protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 303 WCPLLSSVHIDAMLASKKTASLRSFAPSTLRRAVFSCWLRRPRLY 169
W L +D K+ AS A STLR+ VF W+R P Y
Sbjct: 454 WPHSLRVQKLDTYQEYKEAASSYQEAWSTLRKQVFGSWIRNPPDY 498
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 363 GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 277
G PDST LGF+ + TS W PL S H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,394,457
Number of Sequences: 237096
Number of extensions: 1776405
Number of successful extensions: 7692
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7685
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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