Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30284
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 89 2e-18
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 30 1.2
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 29 1.6
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 29 1.6
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81529-2|CAB04298.2| 133|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 27 6.5
U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in b... 27 8.6
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 89.0 bits (211), Expect = 2e-18
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +1
Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
+AGK VY+Y+A +T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G
Sbjct: 55 YAGKRVVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALG 112
Query: 433 HRIRVMLYPSRI 468
RIRV+LYPS I
Sbjct: 113 KRIRVLLYPSNI 124
Score = 64.1 bits (149), Expect = 6e-11
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +2
Query: 107 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVF 253
V R+ S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA F
Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGF 54
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical
protein F31C3.3 protein.
Length = 2029
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 303 WCPLLSSVHIDAMLASKKTASLRSFA-PSTLRRAV 202
W P L + DA + KKT L SF PSTL R V
Sbjct: 532 WSPQLHLIVFDAYKSVKKTVQLLSFPNPSTLTRKV 566
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 408 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLA 259
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILA 889
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 408 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLA 259
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA
Sbjct: 950 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILA 1000
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -2
Query: 391 GHCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQQKDCIITVFC 227
G + C VG S CPR F C + L CT R+ AC+ + II C
Sbjct: 1127 GEPEKCVVGQSNCPR----GFACQ---KSLAGHHVCCTVRKVACESNEVIIEGEC 1174
>Z81529-2|CAB04298.2| 133|Caenorhabditis elegans Hypothetical
protein F35E8.2 protein.
Length = 133
Score = 27.9 bits (59), Expect = 4.9
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 126 SPATAGCTQRPYSQDISVVYATSTRTP--LSSRLKEQKTVMMQSFCWQALRLCVQS*EED 299
+PA GC+ +V+Y LSS +Q+ + QS C + LC Q+ +
Sbjct: 34 TPAATGCSNVISDSSCAVLYPAPVPADGYLSSGKDQQRPLASQSSCPKKCGLCCQTSAYN 93
Query: 300 TNSRRSPWQKNQAACYLGQGDPPTWQ 377
+ P + N A+ Q P W+
Sbjct: 94 CPNVAFP-RLNCASITSSQCQSPAWR 118
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 467 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 372
+L+G S+ RI AW +D+ + T P P
Sbjct: 38 VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69
>U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 11 protein.
Length = 395
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 108 SFAKHQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFCWQALR-LCVQ 284
S A+ Q P++ GC Q+ Q + +S S ++Q QS C + C Q
Sbjct: 60 SCAQAQQPSSCGCAQQYQQQQCAPTCQSSCEQ--SCVAQQQPIAQCQSSCSSTCQSACAQ 117
Query: 285 S*EEDTNSRRSPWQKNQAAC 344
+ +++ Q QAAC
Sbjct: 118 PVQLQQPAQQQCQQDCQAAC 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,347
Number of Sequences: 27780
Number of extensions: 239453
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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