BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30284 (536 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 89 2e-18 Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 30 1.2 AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 29 1.6 AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 29 1.6 Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 29 2.8 Z81529-2|CAB04298.2| 133|Caenorhabditis elegans Hypothetical pr... 28 4.9 Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 27 6.5 U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in b... 27 8.6 >U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein, large subunitprotein 33 protein. Length = 124 Score = 89.0 bits (211), Expect = 2e-18 Identities = 41/72 (56%), Positives = 52/72 (72%) Frame = +1 Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432 +AGK VY+Y+A +T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G Sbjct: 55 YAGKRVVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALG 112 Query: 433 HRIRVMLYPSRI 468 RIRV+LYPS I Sbjct: 113 KRIRVLLYPSNI 124 Score = 64.1 bits (149), Expect = 6e-11 Identities = 29/49 (59%), Positives = 37/49 (75%) Frame = +2 Query: 107 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVF 253 V R+ S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA F Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGF 54 >Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein F31C3.3 protein. Length = 2029 Score = 29.9 bits (64), Expect = 1.2 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -3 Query: 303 WCPLLSSVHIDAMLASKKTASLRSFA-PSTLRRAV 202 W P L + DA + KKT L SF PSTL R V Sbjct: 532 WSPQLHLIVFDAYKSVKKTVQLLSFPNPSTLTRKV 566 >AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical protein Y110A7A.9b protein. Length = 908 Score = 29.5 bits (63), Expect = 1.6 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 408 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLA 259 ++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILA 889 >AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical protein Y110A7A.9a protein. Length = 1019 Score = 29.5 bits (63), Expect = 1.6 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 408 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLA 259 ++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA Sbjct: 950 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILA 1000 >Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein ZC84.1 protein. Length = 1556 Score = 28.7 bits (61), Expect = 2.8 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -2 Query: 391 GHCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQQKDCIITVFC 227 G + C VG S CPR F C + L CT R+ AC+ + II C Sbjct: 1127 GEPEKCVVGQSNCPR----GFACQ---KSLAGHHVCCTVRKVACESNEVIIEGEC 1174 >Z81529-2|CAB04298.2| 133|Caenorhabditis elegans Hypothetical protein F35E8.2 protein. Length = 133 Score = 27.9 bits (59), Expect = 4.9 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Frame = +3 Query: 126 SPATAGCTQRPYSQDISVVYATSTRTP--LSSRLKEQKTVMMQSFCWQALRLCVQS*EED 299 +PA GC+ +V+Y LSS +Q+ + QS C + LC Q+ + Sbjct: 34 TPAATGCSNVISDSSCAVLYPAPVPADGYLSSGKDQQRPLASQSSCPKKCGLCCQTSAYN 93 Query: 300 TNSRRSPWQKNQAACYLGQGDPPTWQ 377 + P + N A+ Q P W+ Sbjct: 94 CPNVAFP-RLNCASITSSQCQSPAWR 118 >Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical protein F17C8.2 protein. Length = 296 Score = 27.5 bits (58), Expect = 6.5 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -1 Query: 467 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 372 +L+G S+ RI AW +D+ + T P P Sbjct: 38 VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69 >U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in blocked unfolded proteinresponse protein 11 protein. Length = 395 Score = 27.1 bits (57), Expect = 8.6 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 108 SFAKHQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFCWQALR-LCVQ 284 S A+ Q P++ GC Q+ Q + +S S ++Q QS C + C Q Sbjct: 60 SCAQAQQPSSCGCAQQYQQQQCAPTCQSSCEQ--SCVAQQQPIAQCQSSCSSTCQSACAQ 117 Query: 285 S*EEDTNSRRSPWQKNQAAC 344 + +++ Q QAAC Sbjct: 118 PVQLQQPAQQQCQQDCQAAC 137 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,002,347 Number of Sequences: 27780 Number of extensions: 239453 Number of successful extensions: 561 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 552 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 560 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1070714938 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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