Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30284
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    81   6e-16
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    80   1e-15
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    78   3e-15
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    78   3e-15
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    28   4.5  
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    27   6.0  
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    27   6.0  
At5g51195.1 68418.m06348 hypothetical protein                          27   7.9  

>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 39/74 (52%), Positives = 48/74 (64%)
 Frame = +1

Query: 247 SLFAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 426
           S + GK   Y+Y+AK +           +  R IWGKVTRPHGNSG VRAKF SNLP ++
Sbjct: 47  SWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKS 98

Query: 427 MGHRIRVMLYPSRI 468
           MG R+RV +YPS I
Sbjct: 99  MGSRVRVFMYPSNI 112



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +2

Query: 140 RLYAKAVFTGYKRGLRNQHENTALLKVEG 226
           RLY +    GYKR   NQ+ NT+L++VEG
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEG 39


>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 38/72 (52%), Positives = 47/72 (65%)
 Frame = +1

Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
           + GK   Y+Y+AK +           +  R IWGKVTRPHGNSG VRAKF SNLP ++MG
Sbjct: 49  YKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMG 100

Query: 433 HRIRVMLYPSRI 468
            R+RV +YPS I
Sbjct: 101 SRVRVFMYPSNI 112



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 140 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRND 244
           RLY +    GYKR   NQ+ NT+L+++EG   + +
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEE 45


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 47/72 (65%)
 Frame = +1

Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
           + GK   Y+Y+AK +           +  R IWGKVTRPHGNSG VR+KF SNLP ++MG
Sbjct: 48  YKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMG 99

Query: 433 HRIRVMLYPSRI 468
            R+RV +YPS I
Sbjct: 100 ARVRVFMYPSNI 111



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 140 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRND 244
           RLY +    GYKR   NQ+ NT+L+++EG   + +
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEE 44


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 47/72 (65%)
 Frame = +1

Query: 253 FAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 432
           + GK   Y+Y+AK +           +  R IWGKVTRPHGNSG VR+KF SNLP ++MG
Sbjct: 48  YKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMG 99

Query: 433 HRIRVMLYPSRI 468
            R+RV +YPS I
Sbjct: 100 ARVRVFMYPSNI 111



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 140 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRND 244
           RLY +    GYKR   NQ+ NT+L+++EG   + +
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEE 44


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 393 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASKKTASLRSFAPSTL 214
           SDT  ++   G L   S ++ FF + TSG +C     + +D ++ +     LR +  S  
Sbjct: 45  SDTGELSSGLGFLPQPSYEITFFRSPTSGRFCN--GRLIVDFLMEAIDRPYLRPYLDSIS 102

Query: 213 RR 208
           R+
Sbjct: 103 RQ 104


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 327 FATGTSGNWCPLLSSVHIDAMLASKKTASLRSFA-PSTLRRAV 202
           FA G  G W P     H+DAML  +   +L  F    TL+ AV
Sbjct: 645 FAAGKLG-WDPKQGESHLDAMLRGEVLTALAVFGHDETLKEAV 686


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 450 HHSYSVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 283
           H S  +S  +LGRE  L +G D        G + P+ST+L + A+ ++   C  ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360


>At5g51195.1 68418.m06348 hypothetical protein
          Length = 267

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 414 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 298
           E++ E+ S+      W      D T   FFA+  SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,646,797
Number of Sequences: 28952
Number of extensions: 227855
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)