BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30283 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 131 7e-32 SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 131 7e-32 SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.015 SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.9 SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.1 SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.7 SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 8.9 SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu... 25 8.9 >SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein S18|Schizosaccharomyces pombe|chr 3|||Manual Length = 152 Score = 131 bits (316), Expect = 7e-32 Identities = 59/79 (74%), Positives = 70/79 (88%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196 MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60 Query: 197 EEEVEKIITIMSNPRQYKI 253 EE+E+I+TI+ NP Q+KI Sbjct: 61 TEELERIVTIIQNPSQFKI 79 Score = 89.8 bits (213), Expect = 2e-19 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +1 Query: 259 WFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH LRVRGQH Sbjct: 82 WFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135 >SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizosaccharomyces pombe|chr 2|||Manual Length = 152 Score = 131 bits (316), Expect = 7e-32 Identities = 59/79 (74%), Positives = 70/79 (88%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196 MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60 Query: 197 EEEVEKIITIMSNPRQYKI 253 EE+E+I+TI+ NP Q+KI Sbjct: 61 TEELERIVTIIQNPSQFKI 79 Score = 89.8 bits (213), Expect = 2e-19 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +1 Query: 259 WFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH LRVRGQH Sbjct: 82 WFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135 >SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schizosaccharomyces pombe|chr 3|||Manual Length = 151 Score = 33.9 bits (74), Expect = 0.015 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +1 Query: 343 DLERLKKIRAHRGMRHYWGLRVRGQH 420 D+ RL IR +RGMRH GL V GQ+ Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101 >SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|Schizosaccharomyces pombe|chr 1|||Manual Length = 463 Score = 26.2 bits (55), Expect = 2.9 Identities = 10/37 (27%), Positives = 20/37 (54%) Frame = -3 Query: 229 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 119 +++D F+ F C F+ + G + NN G+ P ++ Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372 >SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 762 Score = 25.4 bits (53), Expect = 5.1 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 80 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 172 GK+KV+ I + R+YSN+ +KA+ L Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40 >SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 25.0 bits (52), Expect = 6.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -1 Query: 246 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 127 YC F + + + V+SP ++ M+ F+R +L YL+ Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97 >SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 817 Score = 24.6 bits (51), Expect = 8.9 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = +3 Query: 312 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 455 L L FK+ + D +R AT + S W A+ YWQ W Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90 >SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit 10|Schizosaccharomyces pombe|chr 3|||Manual Length = 85 Score = 24.6 bits (51), Expect = 8.9 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -3 Query: 277 FAYLGTSLYLILPRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVG 137 FA S+ +LP + S +N+FF +S I V F +G Sbjct: 3 FAQFSHSITNLLPSLSMASSTIYNIFFRRNSSFYATIFVSAFFAKIG 49 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,966,058 Number of Sequences: 5004 Number of extensions: 40010 Number of successful extensions: 107 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 107 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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