BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30283 (516 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 117 5e-27 07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 106 9e-24 03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 105 3e-23 07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 3e-18 03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.006 03_01_0404 + 3138624-3140096 31 0.55 10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.2 01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.2 06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 3.9 03_01_0646 + 4742398-4742994,4743681-4744085 27 6.8 >07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 Length = 148 Score = 117 bits (282), Expect = 5e-27 Identities = 47/73 (64%), Positives = 68/73 (93%) Frame = +2 Query: 35 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 214 + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+ Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62 Query: 215 IITIMSNPRQYKI 253 ++T+++NPRQ+K+ Sbjct: 63 LMTVVANPRQFKV 75 Score = 99 bits (238), Expect = 1e-21 Identities = 42/55 (76%), Positives = 49/55 (89%) Frame = +1 Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 DWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 77 DWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131 >07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394, 3905714-3905902,3906872-3906977 Length = 168 Score = 106 bits (255), Expect = 9e-24 Identities = 51/95 (53%), Positives = 72/95 (75%), Gaps = 16/95 (16%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 181 MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60 Query: 182 -----------AGECTEEEVEKIITIMSNPRQYKI 253 AGE T EE+E+++T+++NPRQ+K+ Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKV 95 Score = 99 bits (238), Expect = 1e-21 Identities = 42/55 (76%), Positives = 49/55 (89%) Frame = +1 Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 DWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 97 DWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151 >03_06_0283 - 32832572-32832677,32833343-32833531,32833582-32833796, 32833900-32833902 Length = 170 Score = 105 bits (251), Expect = 3e-23 Identities = 51/97 (52%), Positives = 72/97 (74%), Gaps = 18/97 (18%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 181 MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60 Query: 182 -------------AGECTEEEVEKIITIMSNPRQYKI 253 AGE T EE+E+++T+++NPRQ+K+ Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKV 97 Score = 99 bits (238), Expect = 1e-21 Identities = 42/55 (76%), Positives = 49/55 (89%) Frame = +1 Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 DWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 99 DWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153 >07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 Length = 78 Score = 88.2 bits (209), Expect = 3e-18 Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%) Frame = +1 Query: 259 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61 >03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 Length = 161 Score = 37.5 bits (83), Expect = 0.006 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = +1 Query: 337 REDLERLKKIRAHRGMRHYWGLRVRGQ 417 R +ERLK+IR +RG+RH GL VRGQ Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134 >03_01_0404 + 3138624-3140096 Length = 490 Score = 31.1 bits (67), Expect = 0.55 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +1 Query: 289 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 387 +G Y QL++ LDS ++D R++K+ RG+R Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435 >10_07_0063 - 12502305-12503361,12503567-12503668,12504251-12504378, 12504653-12504764,12504876-12504927,12505260-12505517, 12505943-12506079,12506296-12506606 Length = 718 Score = 29.1 bits (62), Expect = 2.2 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 350 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 460 RG + L C+++ F+C +STL + ELL++ Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220 >01_07_0179 - 41814886-41815074,41815172-41815222,41815365-41815469, 41815852-41815945,41816056-41816150,41816581-41816700, 41816737-41816832,41817272-41817569,41817777-41817853, 41818932-41819447 Length = 546 Score = 29.1 bits (62), Expect = 2.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 347 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 454 W+ FA+ G D+ F+ + T LLA EE LL Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247 >06_03_1275 + 28903961-28904123,28904225-28904322,28904406-28904550, 28904690-28904814,28904957-28905049,28905297-28905362, 28905459-28905524,28905790-28905870,28905947-28906123, 28906212-28906287,28906394-28906521,28906639-28906950 Length = 509 Score = 28.3 bits (60), Expect = 3.9 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 162 SAFLRTMLEYLRPTPLIAVIANITL 88 S+FL TM EY+R P A +AN T+ Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279 >03_01_0646 + 4742398-4742994,4743681-4744085 Length = 333 Score = 27.5 bits (58), Expect = 6.8 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 100 CDDGYQRCWPEVLQHCSQKSR 162 CDD Y+R W +L+ ++SR Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,853,810 Number of Sequences: 37544 Number of extensions: 262208 Number of successful extensions: 715 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 714 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1118831240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -