Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30283
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   123   9e-29
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.65 
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  123 bits (296), Expect = 9e-29
 Identities = 54/79 (68%), Positives = 69/79 (87%)
 Frame = +2

Query: 17  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 197 EEEVEKIITIMSNPRQYKI 253
           EE+ +KI+TIM NP QYKI
Sbjct: 61  EEDFDKIVTIMQNPSQYKI 79



 Score =  100 bits (239), Expect = 7e-22
 Identities = 43/55 (78%), Positives = 49/55 (89%)
 Frame = +1

Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420
           +WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRVRGQH
Sbjct: 81  NWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 338 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 472
           +K +R   + AL     +TGA + + +TL LLA    LL  QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 100  CDDGYQRCWPEVLQHCS 150
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,580
Number of Sequences: 27780
Number of extensions: 227968
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)