BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30283 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 118 2e-27 At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 118 2e-27 At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 118 2e-27 At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 32 0.20 At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 29 1.9 At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,... 29 2.5 At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 3.2 At2g42630.1 68415.m05276 protein kinase family protein contains ... 27 5.7 >At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) Length = 152 Score = 118 bits (284), Expect = 2e-27 Identities = 49/79 (62%), Positives = 71/79 (89%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196 MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE + Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60 Query: 197 EEEVEKIITIMSNPRQYKI 253 E++ ++TI++NPRQ+KI Sbjct: 61 AAEIDNLMTIVANPRQFKI 79 Score = 104 bits (249), Expect = 4e-23 Identities = 45/55 (81%), Positives = 49/55 (89%) Frame = +1 Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 DWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 81 DWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135 >At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar to ribosomal protein S18 GI:38422 from [Homo sapiens] Length = 152 Score = 118 bits (284), Expect = 2e-27 Identities = 49/79 (62%), Positives = 71/79 (89%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196 MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE + Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60 Query: 197 EEEVEKIITIMSNPRQYKI 253 E++ ++TI++NPRQ+KI Sbjct: 61 AAEIDNLMTIVANPRQFKI 79 Score = 104 bits (249), Expect = 4e-23 Identities = 45/55 (81%), Positives = 49/55 (89%) Frame = +1 Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 DWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 81 DWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135 >At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and gb|R30430 come from this gene Length = 152 Score = 118 bits (284), Expect = 2e-27 Identities = 49/79 (62%), Positives = 71/79 (89%) Frame = +2 Query: 17 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 196 MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE + Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60 Query: 197 EEEVEKIITIMSNPRQYKI 253 E++ ++TI++NPRQ+KI Sbjct: 61 AAEIDNLMTIVANPRQFKI 79 Score = 104 bits (249), Expect = 4e-23 Identities = 45/55 (81%), Positives = 49/55 (89%) Frame = +1 Query: 256 DWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 420 DWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH Sbjct: 81 DWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135 >At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast (CS13) ribosomal protein S13 precursor, chloroplast Arabidopsis thaliana, PIR:S59594; identical to cDNA ribosomal protein S13 GI:1515106 Length = 169 Score = 32.3 bits (70), Expect = 0.20 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = +1 Query: 346 LERLKKIRAHRGMRHYWGLRVRGQ 417 ++RLK+I+ +RG+RH GL RGQ Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145 >At1g61710.1 68414.m06960 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 402 Score = 29.1 bits (62), Expect = 1.9 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -3 Query: 214 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 119 FFNLFF A +KI +G F ++ +PP+++ Sbjct: 34 FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64 >At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast, putative similar to putative 30S ribosomal protein S13, chloroplast precursor GB:P42732 [Arabidopsis thaliana] Length = 154 Score = 28.7 bits (61), Expect = 2.5 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +1 Query: 322 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 417 L ++ +++RL ++ +RG RH GL RGQ Sbjct: 98 LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129 >At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative similar to UDP-galactose 4-epimerase from Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba GI:3021357 [AJ005082] Length = 351 Score = 28.3 bits (60), Expect = 3.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 292 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 387 G YS + NLD+ L+R+KK+ A G R Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57 >At2g42630.1 68415.m05276 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 357 Score = 27.5 bits (58), Expect = 5.7 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 173 DKRAGECTEEEVEKIITIMSNPRQYKIQ 256 D +GEC+ K I++ S+PR Y+IQ Sbjct: 34 DLVSGECSTVYPRKSISLPSSPRSYQIQ 61 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,228,891 Number of Sequences: 28952 Number of extensions: 207816 Number of successful extensions: 590 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 573 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 590 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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