BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30282X (314 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 27 0.67 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 2.7 SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 24 4.7 SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 24 6.3 SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 23 8.3 SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 23 8.3 SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 23 8.3 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 23 8.3 SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 23 8.3 >SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 27.1 bits (57), Expect = 0.67 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +1 Query: 91 SLPVWLWVCWPRKTHAIRTSTKDA 162 ++P+ LW+C P T + TST+DA Sbjct: 94 NVPITLWICAP-LTAILSTSTRDA 116 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.0 bits (52), Expect = 2.7 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 50 H*INRIKYEGVCSHRCL 100 H I+R++ +GVC RCL Sbjct: 446 HAISRVEAQGVCVDRCL 462 >SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 24.2 bits (50), Expect = 4.7 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 204 QFKDNHVVANGLKGLAS 254 QF H+V +G KG+AS Sbjct: 222 QFVSKHIVPDGAKGIAS 238 >SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 641 Score = 23.8 bits (49), Expect = 6.3 Identities = 11/44 (25%), Positives = 17/44 (38%) Frame = +2 Query: 77 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPI 208 G+ CL GC G G +L+ + R + A R + Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDV 335 >SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1098 Score = 23.4 bits (48), Expect = 8.3 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +1 Query: 1 VLSTYVKRTCYFFENS 48 V YV+R CY+ EN+ Sbjct: 273 VFDKYVERECYYSENA 288 >SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizosaccharomyces pombe|chr 2|||Manual Length = 443 Score = 23.4 bits (48), Expect = 8.3 Identities = 7/16 (43%), Positives = 11/16 (68%) Frame = +1 Query: 76 RCMLSSLPVWLWVCWP 123 RC+L S+ W +C+P Sbjct: 268 RCLLPSVTFWQNICYP 283 >SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual Length = 1339 Score = 23.4 bits (48), Expect = 8.3 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 31 YFFENSPLNKSHQI*RCMLSSLPVWLW 111 YF N P K HQI R + L +++ Sbjct: 23 YFDANLPFKKRHQIVRSIYHGLKYYIY 49 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 23.4 bits (48), Expect = 8.3 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +2 Query: 62 RIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSER 235 ++ YEG R +GS AG+ + + +R + K A +R+ R + Q R E+ Sbjct: 56 KLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEA--ERLKREKERQQREQEK 111 >SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 690 Score = 23.4 bits (48), Expect = 8.3 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = -2 Query: 256 HEANPLSPFATTWLSLNWP 200 H A PLSP WL + P Sbjct: 261 HTAVPLSPTLAVWLPMTQP 279 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,250,762 Number of Sequences: 5004 Number of extensions: 22036 Number of successful extensions: 40 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 40 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 83936266 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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