Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30282X
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   0.67 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   2.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    24   4.7  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   6.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    23   8.3  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    23   8.3  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   8.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    23   8.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    23   8.3  

>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 91  SLPVWLWVCWPRKTHAIRTSTKDA 162
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 50  H*INRIKYEGVCSHRCL 100
           H I+R++ +GVC  RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 204 QFKDNHVVANGLKGLAS 254
           QF   H+V +G KG+AS
Sbjct: 222 QFVSKHIVPDGAKGIAS 238


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +2

Query: 77  GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPI 208
           G+    CL   GC G G  +L+ +  R    +   A     R +
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDV 335


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 1   VLSTYVKRTCYFFENS 48
           V   YV+R CY+ EN+
Sbjct: 273 VFDKYVERECYYSENA 288


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 76  RCMLSSLPVWLWVCWP 123
           RC+L S+  W  +C+P
Sbjct: 268 RCLLPSVTFWQNICYP 283


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 31  YFFENSPLNKSHQI*RCMLSSLPVWLW 111
           YF  N P  K HQI R +   L  +++
Sbjct: 23  YFDANLPFKKRHQIVRSIYHGLKYYIY 49


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 62  RIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSER 235
           ++ YEG    R  +GS  AG+ + +  +R    +   K A  +R+ R  + Q R  E+
Sbjct: 56  KLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEA--ERLKREKERQQREQEK 111


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 256 HEANPLSPFATTWLSLNWP 200
           H A PLSP    WL +  P
Sbjct: 261 HTAVPLSPTLAVWLPMTQP 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,762
Number of Sequences: 5004
Number of extensions: 22036
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)