Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30282X
         (314 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.007
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.028
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.049
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   1.8  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 26   5.6  
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               26   5.6  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         26   7.4  
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)           25   9.8  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.8  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 60  IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 221
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 80  VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 202
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.049
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 72  MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 221
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 71  YEGVCSHRCLSGSGCAGRGRLML 139
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  HTSNALVIFSRIRH*INRIKYEGVCSHRCLS 103
           H  +   +F R+ H  NR++Y+G  ++ C++
Sbjct: 369 HVRHEASLFGRMNHYENRVEYKGFTANICIA 399


>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 74  EGVCSHRCLSGSGCAGR 124
           +  C HRC+ G  C GR
Sbjct: 174 QSCCGHRCVFGKSCYGR 190


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 74  EGVCSHRCLSGSGCAGR 124
           +  C HRC+ G  C GR
Sbjct: 96  QSCCGHRCVFGKSCYGR 112


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 93  VACL-ALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDN 218
           V CL A+G++A+  S   +VDQ C    +   C ++Y     N
Sbjct: 7   VLCLCAIGLVAKAQSDCVDVDQQCSFWANSGFCKSHYDYMSKN 49


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 68  KYEGVCSHRCLSG 106
           K++ VCSHRC SG
Sbjct: 316 KFDQVCSHRCPSG 328


>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
          Length = 530

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 201 GQFKDNHVVANGLKGLASCI 260
           GQF +N++  N  +GL SC+
Sbjct: 21  GQFGENYIWTNQRRGLESCL 40


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 177 DLKSVCILGRRSDSMSLPRPA 115
           D + +CI+ R++D  S P+P+
Sbjct: 813 DAEGICIIRRKNDLTSAPKPS 833


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,641,388
Number of Sequences: 59808
Number of extensions: 177037
Number of successful extensions: 388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)