Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30282X
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   0.70 
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    27   2.8  
AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondria...    26   6.6  
U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 125 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 220
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 63  ASNMKVYALIVACLALGVLAEEDSCY 140
           +SN+  Y  ++ C+AL V A   SCY
Sbjct: 275 SSNLYAYMFLLRCIALDVRAHIVSCY 300


>AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondrial
           processing peptidasealpha protein 1 protein.
          Length = 477

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -3

Query: 234 RSLQRGCP*IGRNTR 190
           +S+++GCP +GRN+R
Sbjct: 6   KSIEKGCPPMGRNSR 20


>U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical
           protein C16C8.18 protein.
          Length = 270

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 93  VACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQ-FKDNHV 224
           V C   G LAEE S  + +D G +    L    A Y Q F+  H+
Sbjct: 121 VLCSTCGRLAEESSLKKKLDYGFKFKTYLDEAIAIYDQDFELTHM 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,963,859
Number of Sequences: 27780
Number of extensions: 127447
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)