Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30282X
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50890.1 68414.m05722 expressed protein                             27   3.5  
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    26   4.6  
At2g37880.1 68415.m04650 expressed protein contains Pfam profile...    26   4.6  
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    26   6.1  
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr...    25   8.1  
At4g17430.1 68417.m02609 expressed protein weak similarity to Ci...    25   8.1  
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa...    25   8.1  

>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 106 LWVCWPRKTHAIRTSTKDA 162
           +W CW    HA+R    D+
Sbjct: 679 IWTCWSNSVHALRVGDTDS 697


>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 274 VGTFQIHEANPLSPFATTWLS 212
           +  +++HE +PL PF T WL+
Sbjct: 117 IENYKVHE-HPLKPFKTAWLA 136


>At2g37880.1 68415.m04650 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 247

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  CMLSSLPVWLWVCWPRKT-HAIRTSTKD 159
           C+L S+PVW   C  RK   A+R S  +
Sbjct: 143 CLLRSVPVWTMFCNGRKLGFAVRRSANE 170


>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1556

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 156  GCRRTLSLPHCSAYYGQFKDNHVVANGLKGLASCI 260
            GCR    LP C  Y    +D ++    L+ L S I
Sbjct: 970  GCRSIEELPSCVGYLTSLEDLYLDDTALRNLPSSI 1004


>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;annotation temporarily based on
           supporting cDNA gi|17224394|gb|AF246291.1|AF246291
          Length = 637

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +2

Query: 83  CSHRCLSGSGCAGR-------GRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERT* 241
           C H+ L+ S C  +       GR+    R+ R+Q   +    QR ++ +   PR  +   
Sbjct: 300 CVHQSLNSSDCVSQTFVEGAAGRVAYGARKSRVQRLGQIQEQQRNVKTLSFDPRNDDVHY 359

Query: 242 RISLMYLKRSYHYLLSGS*FNN 307
           +  +  + ++ H L+ G  F N
Sbjct: 360 QSVISTIFKTNHQLILGPQFRN 381


>At4g17430.1 68417.m02609 expressed protein weak similarity to CigA
           protein [Mucor circinelloides] GI:9717020
          Length = 507

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 60  IASNMKVYALIVAC--LALGVLAEEDSCYQNVDQGCRRTL 173
           +A   + Y  +  C  L  GV    D C   VD+ CR T+
Sbjct: 200 LAEQSQAYESLKQCGYLLSGVRGNVDKCLYAVDEDCRTTV 239


>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 466

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 186 SAADLKSVCILG-RRSDSMSLPRPAHPEPDRQR 91
           S+A ++S  I+G +R   +++P P H E D  R
Sbjct: 221 SSASIQSNLIIGSKRKRRLNMPAPTHEERDSLR 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,338
Number of Sequences: 28952
Number of extensions: 121926
Number of successful extensions: 272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)