Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30281
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.6  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   3.5  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.6  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   6.1  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   8.0  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    25   8.0  

>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 138 NVYRSLGVQCNAESKIASTT-KFCTEKLCGQKLCTRTSNKVATRSQPTLRERLMAPAGPN 314
           +++   G  C+A    AS +    +E LC +     T+ K AT   P+L+  L   A P 
Sbjct: 196 SLFDLFGFYCHAGHSYASRSIDAASEFLCAEIDAANTAAKFATSIDPSLKLTLSVGATPT 255

Query: 315 A 317
           A
Sbjct: 256 A 256


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = -2

Query: 561 IHPFLATKFRSAGVLKTALHYQQSAPKNPRCIHMLFLYVLSHIVAKGEIPEEY 403
           + PFL     ++ +L +   + +S P  PR    L L ++ + + KG++ +++
Sbjct: 355 VSPFLTPDNIASSILYSTASFSRSKPDRPRLNLSLELKLMQNELNKGQLKKQF 407


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 175 SLKSPVPQNFVPRNYVVRNYAREPRTRSLHAHN 273
           S+KSP P   +  +++V +YA +    S+H HN
Sbjct: 115 SIKSPPPS--LTSDWIVDSYASDQDNPSVHTHN 145


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 164 LNAERPIHIRDNIINSENVYVYFNRI 87
           +N  R +H+  N++  EN YV+ N I
Sbjct: 557 INPVRVLHVLINLLRDENSYVHLNVI 582


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 574 DNNGHPSISCYQI*KCGCSENSTALPAV 491
           D NGHP+   +   K   SEN+ A+P +
Sbjct: 564 DENGHPNAVGWSSSKGSSSENTDAMPYI 591


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 405 TLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVLFSE 521
           T+QE+      +K++ + T+  + GSL LT G  V+  +
Sbjct: 464 TIQEAIETVMSIKQKSRNTFVCVTGSLHLTGGVFVVLDQ 502


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 555 PFLATKFRSAGVLKTALHYQ 496
           PFL  KFR  G++  + HY+
Sbjct: 53  PFLLEKFRPKGIIVFSAHYE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,217
Number of Sequences: 5004
Number of extensions: 67492
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)