Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30281
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0987 - 23155134-23155693,23155781-23157023 32 0.51
05_03_0392 - 13432385-13432622,13432734-13433104 32 0.51
01_07_0224 - 42121011-42122486 31 0.90
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 29 2.7
01_06_0166 + 27145250-27145778,27146062-27146516 29 2.7
12_01_0025 + 203476-203655,205006-205233,205317-206000 29 3.6
10_08_0722 + 20109958-20110689 29 3.6
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 4.8
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61... 28 6.3
07_01_0313 + 2216498-2216953 28 8.4
>07_03_0987 - 23155134-23155693,23155781-23157023
Length = 600
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 588 IRPNVTIMDIHPFLATKFRSAGVLKTALHYQQSAPKNPRCIHMLFL 451
++P+ ++D H A GV++ A + QQS P+ PRC LFL
Sbjct: 456 VKPSNILLDEHG--AACVSECGVMRYAANIQQSIPQPPRCPPGLFL 499
>05_03_0392 - 13432385-13432622,13432734-13433104
Length = 202
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 518 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIM 679
R P+ R+ ++V G ++G G V G EY G + W H ++
Sbjct: 5 RNPSRHRRPRRSDLRDVVVDRGEVVGGGGKVEGREYVGGLAGHLVVWAPHIALL 58
>01_07_0224 - 42121011-42122486
Length = 491
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 588 IRPNVTIMDIHPFLATKFRSAGVLKTALHYQQSAPKNPR 472
+R N TI+D H LA + +AG Q AP+ PR
Sbjct: 277 LRDNKTIVDFHDLLAGVYETAGDTVVVDDVTQPAPRRPR 315
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 54 IIQAVSKRKNLN--PVEINVY--VFRINYVITNVYRSLGVQCNAESKIASTTKFCTEKLC 221
II +++RK+++ P+ N++ F+I NV SLG C K +T K +
Sbjct: 725 IIACITERKSISTDPLNFNIFSIAFKIISAYANVGYSLGYSCERLLKPDATCKATSYGFV 784
Query: 222 GQKLCTRTSNKVATRS 269
G+ S + TR+
Sbjct: 785 GKWTDEAISTRAKTRA 800
>01_06_0166 + 27145250-27145778,27146062-27146516
Length = 327
Score = 29.5 bits (63), Expect = 2.7
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Frame = +2
Query: 296 GTCWTKCIQLGQGCISWSLCSWTSCSVLLWLWGKTRYSSGISPLATICERTYKNNIWIHR 475
G W + G GC++WS+ + ++ W G R + LA + +
Sbjct: 143 GVAWRPARRRGVGCVTWSVEAGSAA----WRRGWQREADAGESLAVPLASSMMTTLLALF 198
Query: 476 GFFGADCW*CSAVFRTPALLNLVARNGWMSIIVTLGLMIG---SGMVVRGMEYTPGFGAK 646
F A W CSA+ T + + R VT +++G SG + M FG+K
Sbjct: 199 PFLKALSW-CSAICPTNLQVKTLLRLRTSGDGVTRRVLLGGVASGKFLTSMTIDGPFGSK 257
>12_01_0025 + 203476-203655,205006-205233,205317-206000
Length = 363
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 344 WSLCSWTSCSVLLWLWGKTRYSSGISPLATICE 442
W L +W LLWLW R G PL + E
Sbjct: 9 WVLATWWG-EPLLWLWQPFRAGGGAGPLGHLLE 40
>10_08_0722 + 20109958-20110689
Length = 243
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +2
Query: 377 LLWLWGKTRYSSGISPLATICERTYKNNIWIHRGFFGADCW*CSA--VFRTPALLNLVAR 550
L W G + + G+SP RT + W R AD CS V + A LN V +
Sbjct: 172 LCWFEGVSEIAGGVSPPLLDASRTPQLAAWAARFRSAADAVGCSVPRVDKVEAYLNNVLK 231
Query: 551 NGW 559
W
Sbjct: 232 PKW 234
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 281 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 376
SG+ HG W + + G + +S + SCS+
Sbjct: 58 SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89
>04_01_0060 -
607615-607706,608497-608531,609283-609360,610402-610550,
610639-610730,611202-611280,611774-612150,613016-613226
Length = 370
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 583 TQCDNNGHPSISCYQI*KCGCSENSTALPAVSTKEPAMYPYVVFI 449
T C NN + S + KCG + A+PA+S AM Y +I
Sbjct: 70 TGCSNNNYASRKNCK--KCGLPKEEAAMPALSMAGMAMPAYANYI 112
>07_01_0313 + 2216498-2216953
Length = 151
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 699 IGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIRPNVTIMDIHPFLA 544
+ A+T P IP A+ L P P + ++P TMP P V + + P A
Sbjct: 58 VPAVTLPPIP--AVPKVTLPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPA 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,915,729
Number of Sequences: 37544
Number of extensions: 439779
Number of successful extensions: 1231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -