Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30281
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)               56   3e-08
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              30   2.1  
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)                 29   4.9  
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                29   4.9  
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)               28   6.5  
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
          Length = 344

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
 Frame = +3

Query: 375 CYYGSGVKP--GTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVLFSEHPHF*IW*Q 548
           CYYG G+    G +  S +WPQ V++RI  TY Y AGSL +TAG+A   S      ++  
Sbjct: 129 CYYGLGLSSEVGAIDRSVMWPQVVRDRIHATYAYFAGSLAVTAGAAYSISRSRA--VY-T 185

Query: 549 EMDGCPLL--SHWV 584
            M   PLL  +HWV
Sbjct: 186 MMRASPLLLTAHWV 199


>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 344 WSL-CSWTSCSVLLWLWGKTRYSSGISPLATICERTYKNNIWI 469
           W++ C W   + + W +GK      ++P  T+ E  Y NNI I
Sbjct: 217 WNIDCQWIDVTDMAWKFGKFYLRIVVNPNRTVAETDYDNNIGI 259


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 682  SHNTSVRHPC*LFSPKSRCVLHSSYYHARTNHQTQCDN 569
            SH+T V HP   + P+   V H S Y    +H  Q D+
Sbjct: 1587 SHDTFVVHPSAAYEPRGSTVSHESNYIGIPSHVEQYDD 1624


>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 305 WTKCIQLGQGCI-SWS-LCSWTSCSVLLWLWGKTRYSSGISPL 427
           W KC QL + C  +W    SW+SCSV   L  KTR     +PL
Sbjct: 187 WGKC-QLQEHCPGNWGEWSSWSSCSVTCDLGTKTRTRKCDNPL 228


>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = -2

Query: 462 MLFLYVLSHIVAKGE-IPEEYLVLPQSHSSTEQLV 361
           +L ++VLS++VA+GE   E   +L Q+HSS  QL+
Sbjct: 155 LLSMHVLSNLVARGETYHEAEWILFQAHSSLIQLL 189


>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
          Length = 167

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = +2

Query: 302 CWTKC-IQLGQGC--ISWSLCS---WTSCSVLLW 385
           CWTKC I  G  C  +  + C+   WT C+++ W
Sbjct: 98  CWTKCAIVHGTKCAIVHGTKCAIVCWTKCAIVCW 131


>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 183 IASTTKFCTEK---LCGQKLCTRTSNKVATRSQPTL 281
           I  +T FCT K   +C Q  CT+T     T+ +P +
Sbjct: 153 IPGSTGFCTSKESVICTQLWCTKTDLSCTTKVEPAV 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,464,241
Number of Sequences: 59808
Number of extensions: 525145
Number of successful extensions: 1578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)