Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30281
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...    68   8e-12
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    28   5.7  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   5.7  
U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +3

Query: 237 TRTSNKVATRSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSGVKPGT-LQ 413
           +R +     R+ PTL+ERL+ P     F                   YYG   K  + LQ
Sbjct: 41  SRVNQGFGVRTGPTLKERLLGPTTGKPFVYGTYALAGASVFGVGALMYYGLVSKEQSILQ 100

Query: 414 ESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVLFS 518
           +S +WP YV+ERI TTY Y+AGSL LTA S V  S
Sbjct: 101 KSAIWPSYVRERISTTYAYLAGSLALTAVSGVAAS 135



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/67 (44%), Positives = 42/67 (62%)
 Frame = +2

Query: 509 AVFRTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIMGAV 688
           A  R+ A++ L A  G MS+  T+  MI SGM+ R ++Y     AK LAW  H G++GAV
Sbjct: 133 AASRSAAIMRLTAGGGMMSLFGTMAAMIASGMLARSIDYESTV-AKHLAWALHCGVLGAV 191

Query: 689 IAPICFL 709
            AP+CF+
Sbjct: 192 FAPLCFM 198


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 458 CFYTFFHILWPKVRFLKSTWFYPR 387
           C + F H+  P++ F++ TW + R
Sbjct: 190 CIHQFLHLTQPQILFVRKTWNHAR 213


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 356 SWTSCSVLLWLWGKTRYSSGISP 424
           SW S SVL WL G T   + ISP
Sbjct: 219 SWPSTSVLTWLDGSTSDYNNISP 241


>U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical
           protein C45G9.6b protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 141 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSN 251
           V R  G  CN+ +   S   +CT  + G K+C  TSN
Sbjct: 58  VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSN 93


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 141 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSN 251
           V R  G  CN+ +   S   +CT  + G K+C  TSN
Sbjct: 58  VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSN 93


>AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical
           protein Y108F1.3 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 588 IRPNVTIMDIHPFLATKFRSAGVLKTALHYQQSAPKN-PRCIHML 457
           + PN+  ++ H  L  + R+   LKT   YQ++  K+  RC+  +
Sbjct: 171 VEPNIITLNAHLNLLKRIRNDPELKTYYEYQETENKDLGRCMRFI 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,112
Number of Sequences: 27780
Number of extensions: 385938
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)