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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30281
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 189 STTKFCTEKLCGQKLCTRTSNK 254
           S  K  T +LCG+ LC++ S K
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLK 22


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 601 HGSKRNGVHTW 633
           HG KR+G H+W
Sbjct: 697 HGIKRSGSHSW 707


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 432 QYVKERIKTTYGYIAGSLVLTAGSAVLFSEH 524
           QYVK +   T GYI+  L       +L  EH
Sbjct: 445 QYVKVKHSATLGYISRVLEKEPYVIILDDEH 475


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +2

Query: 560 MSIIVTLGLMIGSGMV 607
           +++++TLG+ I SG++
Sbjct: 403 LALVITLGIAIVSGLI 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,447
Number of Sequences: 438
Number of extensions: 5076
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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