Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30281
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43740.1 68415.m05437 hypothetical protein weak similarity to...    29   2.3  
At1g33410.1 68414.m04136 expressed protein                             27   9.2  

>At2g43740.1 68415.m05437 hypothetical protein weak similarity to
           RTM1 (GI:6503088) [Arabidopsis thaliana]
          Length = 309

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 630 GVYSIPLTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKTALH 502
           G+Y  P+T + +  +R N  + D +   +T ++S+G L T  H
Sbjct: 185 GIYVCPITRINDVALRTNYKVTDDYDDQSTFYQSSGPLTTINH 227


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 374 VLLWLWGKTRYSSGISPLATICERTYKNNI 463
           V LWL GK  Y SGI PLA +  ++  +++
Sbjct: 278 VRLWL-GKADYDSGIIPLAVLYRKSMNDSM 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,989
Number of Sequences: 28952
Number of extensions: 352446
Number of successful extensions: 1062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)