Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30280X
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   140   2e-34
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   139   2e-34
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   6.1  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.0  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   8.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  140 bits (338), Expect = 2e-34
 Identities = 69/98 (70%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
 Frame = +1

Query: 256 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 435
           YRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+
Sbjct: 84  YRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRR 143

Query: 436 LFNLSKEDDVRRYVVKR-VLPAKEGKR--TLNPDIRHL 540
            FNLSKEDDVR++V++R V+P KEGK+  T  P I+ L
Sbjct: 144 FFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRL 181



 Score =  114 bits (274), Expect = 1e-26
 Identities = 51/81 (62%), Positives = 61/81 (75%)
 Frame = +2

Query: 8   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 188 FPMKQGVLTNSRVRLLMSKGH 250
           FPM QGVL   RVRLL+  GH
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGH 81



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 504 RKENAKPRHKAPKIQRLVTPVVLQ 575
           +KE  KP  KAPKIQRLVTP  LQ
Sbjct: 165 KKEGKKPYTKAPKIQRLVTPRTLQ 188


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  139 bits (337), Expect = 2e-34
 Identities = 68/98 (69%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
 Frame = +1

Query: 256 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 435
           YRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+
Sbjct: 84  YRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRR 143

Query: 436 LFNLSKEDDVRRYVVKR-VLPAKEGKR--TLNPDIRHL 540
            FNLSKEDDVR++V++R V+P KEGK+  T  P I+ L
Sbjct: 144 FFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRL 181



 Score =  114 bits (274), Expect = 1e-26
 Identities = 51/81 (62%), Positives = 61/81 (75%)
 Frame = +2

Query: 8   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 188 FPMKQGVLTNSRVRLLMSKGH 250
           FPM QGVL   RVRLL+  GH
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGH 81



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 504 RKENAKPRHKAPKIQRLVTPVVLQ 575
           +KE  KP  KAPKIQRLVTP  LQ
Sbjct: 165 KKEGKKPYTKAPKIQRLVTPRTLQ 188


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 462 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 328
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 28  PGNGMPEVVRSGGRAQASYLLR 93
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 291 FTFSLSIAARSVNEWPFDIRRRTRLFVRTPCFIGNPCLSLPPAT 160
           F   L+IA+  VN++  +   R    VR  C +     ++PPA+
Sbjct: 51  FLQRLNIASVGVNDYHVEYSTRVEKLVRILCRVKEITKTVPPAS 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,212
Number of Sequences: 5004
Number of extensions: 51059
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)