BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30280X (579 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 3e-27 03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 116 1e-26 02_01_0295 - 1973115-1973404,1974138-1974663 33 0.22 09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 3.5 05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 28 6.2 03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 6.2 11_01_0125 + 1018059-1018403 27 8.2 04_01_0200 + 2400929-2402161 27 8.2 01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 8.2 >07_03_1309 + 25669394-25669399,25669520-25669584,25670543-25670600, 25670683-25670791,25670872-25671144,25671348-25671589 Length = 250 Score = 118 bits (284), Expect = 3e-27 Identities = 60/95 (63%), Positives = 71/95 (74%), Gaps = 3/95 (3%) Frame = +1 Query: 265 RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFN 444 RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFN Sbjct: 89 RRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFN 148 Query: 445 LSKEDDVRRYV--VKRVLPAKEGKRTLN-PDIRHL 540 LSK+DDVR+YV +R K GK+ P I+ L Sbjct: 149 LSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183 Score = 110 bits (265), Expect = 7e-25 Identities = 48/80 (60%), Positives = 61/80 (76%) Frame = +2 Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187 MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 188 FPMKQGVLTNSRVRLLMSKG 247 FPMKQGVLT RVRLL+ +G Sbjct: 61 FPMKQGVLTAGRVRLLLHRG 80 Score = 35.1 bits (77), Expect = 0.041 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = +3 Query: 510 ENAKPRHKAPKIQRLVTPVVLQR 578 +N K KAPKIQRLVTP+ LQR Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQR 191 >03_03_0207 - 15455163-15455389,15455623-15455895,15455991-15456099, 15456186-15456243,15457002-15457066,15457190-15457195 Length = 245 Score = 116 bits (280), Expect = 1e-26 Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 3/95 (3%) Frame = +1 Query: 265 RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFN 444 RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFN Sbjct: 89 RRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFN 148 Query: 445 LSKEDDVRRYV--VKRVLPAKEGKRTLN-PDIRHL 540 L+K+DDVR+YV +R K GK+ P I+ L Sbjct: 149 LAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183 Score = 113 bits (272), Expect = 1e-25 Identities = 49/80 (61%), Positives = 62/80 (77%) Frame = +2 Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187 MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 188 FPMKQGVLTNSRVRLLMSKG 247 FPMKQGVLT+ RVRLL+ +G Sbjct: 61 FPMKQGVLTSGRVRLLLHRG 80 Score = 35.1 bits (77), Expect = 0.041 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = +3 Query: 510 ENAKPRHKAPKIQRLVTPVVLQR 578 +N K KAPKIQRLVTP+ LQR Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQR 191 >02_01_0295 - 1973115-1973404,1974138-1974663 Length = 271 Score = 32.7 bits (71), Expect = 0.22 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Frame = +1 Query: 235 DVKGPLIYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLG 408 D+ G I + + G ++ RG + + S AL + GA PG +P R+G Sbjct: 164 DISGKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMG 221 Query: 409 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 507 + +KIRKL + ++D++ ++K +P K G Sbjct: 222 GTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253 >09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570, 19766666-19768450,19768533-19768721,19768816-19768958, 19769075-19769320,19769975-19770059,19770117-19770191, 19770304-19770369,19770466-19770712,19770824-19771242 Length = 1210 Score = 28.7 bits (61), Expect = 3.5 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 163 RWRQRQARIPDE-TGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRG 303 R+R + ++ DE + RP ++ S+S PRR+G R R+S+RG Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170 >05_04_0148 - 18426903-18427106,18430516-18430594,18430752-18430935, 18431020-18431063,18432028-18432165,18432713-18434511 Length = 815 Score = 27.9 bits (59), Expect = 6.2 Identities = 18/50 (36%), Positives = 21/50 (42%) Frame = -2 Query: 320 LASTIHPRTDLRFLSPSRRGL*MSGPLTSEDEHGCLSGRPVSSGILACRC 171 LA+TIH + + SG E EHG R V G LA RC Sbjct: 346 LATTIHQHQHNKVIDDEDES---SGAGEHEHEHGYYCSRAVEVGALAVRC 392 >03_06_0298 - 32925441-32925998,32926371-32926730,32927161-32927230, 32927642-32927797,32929181-32929242,32929339-32929352, 32930421-32930520,32931474-32932574 Length = 806 Score = 27.9 bits (59), Expect = 6.2 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +1 Query: 175 RQARIPDET--GRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGCIVDANLSVLALVIV 348 ++ +IP + GR +K+ S++D + PRR R + R C++D + + + Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684 Query: 349 RKGAQ 363 R+ A+ Sbjct: 685 REEAE 689 >11_01_0125 + 1018059-1018403 Length = 114 Score = 27.5 bits (58), Expect = 8.2 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = +1 Query: 139 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGC 306 +EG+ RWR+ AR RP + S G + + G K +++RGC Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112 >04_01_0200 + 2400929-2402161 Length = 410 Score = 27.5 bits (58), Expect = 8.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 202 GRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGCIVD 315 GRP + + VKG + +RDG +K ++V G I D Sbjct: 4 GRPLESVLVAPGVKGKKVLAFKRDGLKKNEAVTGLIHD 41 >01_07_0254 + 42318181-42319471,42319581-42319792,42319909-42320132, 42320232-42321009 Length = 834 Score = 27.5 bits (58), Expect = 8.2 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +2 Query: 44 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 133 +KL+ E+ DE KLRI YEK+ D+ G Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,392,662 Number of Sequences: 37544 Number of extensions: 386089 Number of successful extensions: 1126 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1093 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1126 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1352600424 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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