Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30280X
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 3e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 116 1e-26
02_01_0295 - 1973115-1973404,1974138-1974663 33 0.22
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 3.5
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 28 6.2
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 6.2
11_01_0125 + 1018059-1018403 27 8.2
04_01_0200 + 2400929-2402161 27 8.2
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 8.2
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (284), Expect = 3e-27
Identities = 60/95 (63%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Frame = +1
Query: 265 RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFN 444
RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFN
Sbjct: 89 RRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFN 148
Query: 445 LSKEDDVRRYV--VKRVLPAKEGKRTLN-PDIRHL 540
LSK+DDVR+YV +R K GK+ P I+ L
Sbjct: 149 LSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 110 bits (265), Expect = 7e-25
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = +2
Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 188 FPMKQGVLTNSRVRLLMSKG 247
FPMKQGVLT RVRLL+ +G
Sbjct: 61 FPMKQGVLTAGRVRLLLHRG 80
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 510 ENAKPRHKAPKIQRLVTPVVLQR 578
+N K KAPKIQRLVTP+ LQR
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQR 191
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 116 bits (280), Expect = 1e-26
Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Frame = +1
Query: 265 RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFN 444
RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFN
Sbjct: 89 RRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFN 148
Query: 445 LSKEDDVRRYV--VKRVLPAKEGKRTLN-PDIRHL 540
L+K+DDVR+YV +R K GK+ P I+ L
Sbjct: 149 LAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 113 bits (272), Expect = 1e-25
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +2
Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 188 FPMKQGVLTNSRVRLLMSKG 247
FPMKQGVLT+ RVRLL+ +G
Sbjct: 61 FPMKQGVLTSGRVRLLLHRG 80
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 510 ENAKPRHKAPKIQRLVTPVVLQR 578
+N K KAPKIQRLVTP+ LQR
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQR 191
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 32.7 bits (71), Expect = 0.22
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 235 DVKGPLIYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLG 408
D+ G I + + G ++ RG + + S AL + GA PG +P R+G
Sbjct: 164 DISGKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMG 221
Query: 409 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 507
+ +KIRKL + ++D++ ++K +P K G
Sbjct: 222 GTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 163 RWRQRQARIPDE-TGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRG 303
R+R + ++ DE + RP ++ S+S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -2
Query: 320 LASTIHPRTDLRFLSPSRRGL*MSGPLTSEDEHGCLSGRPVSSGILACRC 171
LA+TIH + + SG E EHG R V G LA RC
Sbjct: 346 LATTIHQHQHNKVIDDEDES---SGAGEHEHEHGYYCSRAVEVGALAVRC 392
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 175 RQARIPDET--GRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGCIVDANLSVLALVIV 348
++ +IP + GR +K+ S++D + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 349 RKGAQ 363
R+ A+
Sbjct: 685 REEAE 689
>11_01_0125 + 1018059-1018403
Length = 114
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 139 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGC 306
+EG+ RWR+ AR RP + S G + + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>04_01_0200 + 2400929-2402161
Length = 410
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 202 GRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGCIVD 315
GRP + + VKG + +RDG +K ++V G I D
Sbjct: 4 GRPLESVLVAPGVKGKKVLAFKRDGLKKNEAVTGLIHD 41
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 44 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 133
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,662
Number of Sequences: 37544
Number of extensions: 386089
Number of successful extensions: 1126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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