Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30280X
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              152   2e-37
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.004
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)                  29   2.1  
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_42004| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-06)                 29   2.1  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.7  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   3.6  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   3.6  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   4.8  
SB_44717| Best HMM Match : 7tm_1 (HMM E-Value=0.001)                   27   8.4  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  152 bits (369), Expect = 2e-37
 Identities = 82/145 (56%), Positives = 99/145 (68%), Gaps = 11/145 (7%)
 Frame = +1

Query: 139 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGPLIYRPRRDGERKRK 291
           + G C    W+    RI    D+ G P KQ   ++        KG   YRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 292 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 471
           SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122

Query: 472 YVVKRVLPAKEGKRTLN--PDIRHL 540
           YV++R LP KEGK+  +  P I+ L
Sbjct: 123 YVIRRPLPEKEGKKAKSKAPKIQRL 147



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
 Frame = +2

Query: 110 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHS-FTDRAAMERE 283
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHS +  R   ER+
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERK 60



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +3

Query: 507 KENAKPRHKAPKIQRLVTPVVLQR 578
           KE  K + KAPKIQRLVTPVVLQR
Sbjct: 132 KEGKKAKSKAPKIQRLVTPVVLQR 155


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 250 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 86
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
          Length = 748

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 418 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKRTLNPDIRHLRSRG*SPL*FCSV 579
           A  ++ + +    DDV+  ++K ++P KEG  +L+P+  +    G + L F SV
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPETYYSLFVGGAHLRFQSV 75


>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 418 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKRTLNPDIRHLRSRG*SPL*FCSV 579
           A  ++ + +    DDV+  ++K ++P KEG  +L+P+  +    G + L F SV
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPETYYSLFVGGAHLRFPSV 75


>SB_42004| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-06)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 215 NSRVRLLMSKGHSFTDRAAMER-ENVNQFVDVLLT 316
           N R R +M++ H F DRA M R ++   FV+++LT
Sbjct: 220 NKRRRKVMNETHVFVDRAYMWRFKDARVFVNIILT 254


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 295 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 435
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 116 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 199
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 385 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 483
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 418 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKRTLNPDIRHLRSRG*SPL*FCSV 579
           A  ++ + +    DDV+  ++K ++P KEG  +L+P   +    G + L F SV
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPKTYYSLFVGGAHLRFPSV 75


>SB_44717| Best HMM Match : 7tm_1 (HMM E-Value=0.001)
          Length = 400

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 215 NSRVRLLMSKGHSFTDRAAMER-ENVNQFVDVLLT 316
           N R R +M++ H F DRA M R ++   F +++LT
Sbjct: 227 NKRRRKVMNETHVFVDRAYMWRFKDARVFFNIILT 261


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 169  RQRQARIPDETGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVR 300
            R+ + RI ++  R D++     + +  L    RR+ ERKR+ VR
Sbjct: 1050 RREEERIAEQKRRDDEERLRREEEERRLEEERRREEERKREEVR 1093


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,655,382
Number of Sequences: 59808
Number of extensions: 433854
Number of successful extensions: 1322
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)