Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30280X
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 134 4e-32
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 3.2
Z46795-2|CAB54311.1| 932|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z46795-1|CAA86788.1| 924|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 28 5.5
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 28 5.5
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 27 7.3
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 27 7.3
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 27 9.6
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 134 bits (324), Expect = 4e-32
Identities = 62/93 (66%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
Frame = +2
Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 188 FPMKQGVLTNSRVRLLMSKGHS-FTDRAAMERE 283
FPMKQG+LTN RVRLL+ KG S + +R ER+
Sbjct: 61 FPMKQGILTNGRVRLLLKKGQSCYRERKNGERK 93
Score = 126 bits (305), Expect = 9e-30
Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
Frame = +1
Query: 241 KGPLIYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 420
KG YR R++GERKRKSVRGCIVDAN+S L+LVIV+KG EI GLTD +PR+LGPKRA
Sbjct: 79 KGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRA 138
Query: 421 SKIRKLFNLSKEDDVRRYVVKRVLPAKEG-KRTLNPDIRHL 540
SKIRKLFNL+K DDV +YV+ +G +T+ P I+ L
Sbjct: 139 SKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTIAPKIQRL 179
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 26 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 184
Y G ++FE+ E K RIF EK + + ++ ++ L++ G NDK+
Sbjct: 6 YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61
>Z46795-2|CAB54311.1| 932|Caenorhabditis elegans Hypothetical
protein T19E10.1b protein.
Length = 932
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 199 TGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGCIVDANLSV 330
TG+ ++P SS V P+ R R S+R C V+ S+
Sbjct: 295 TGKLHRKPLESSSVSSPIGKSLRSQNSRSLSSMRDCSVEGPTSL 338
>Z46795-1|CAA86788.1| 924|Caenorhabditis elegans Hypothetical
protein T19E10.1a protein.
Length = 924
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 199 TGRPDKQPCSSSDVKGPLIYRPRRDGERKRKSVRGCIVDANLSV 330
TG+ ++P SS V P+ R R S+R C V+ S+
Sbjct: 295 TGKLHRKPLESSSVSSPIGKSLRSQNSRSLSSMRDCSVEGPTSL 338
>Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical
protein F46C5.7 protein.
Length = 199
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -3
Query: 307 YIHELIYVFSLHRGAVCK*VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA* 128
++ L+Y+ + G+V AL H T +A + L+ + ++ YIA ++A
Sbjct: 68 FVFVLLYL-EFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAH 126
Query: 127 LISLYFGAHALF 92
+I Y+G +F
Sbjct: 127 VIYKYYGCQVIF 138
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 41 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 184
C K F+ + ++ E+++ E E Q D W G LR G DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 291 FTFSLSIAARSVNEWPFDIRRR-TRLFVRTPCFIGNPCLSLPPATR 157
FT + + S N RR TR CF+G C PP TR
Sbjct: 14 FTTEFNYSVPSCNACKIFFRRLITRTMPIKKCFLGENCFERPPFTR 59
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 382 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKRTLNPDIRHLRSR 549
D PRR +R S+ R S+ D RRY R +E +R+ + D R RSR
Sbjct: 425 DRRRPRRSNSRRRSRSRDRQRRSRSRDRRRYSPDR----RERRRSRSRDRRRHRSR 476
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 331 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 480
L L +K QE+ P +GPK A +IR L L + + +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 158 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 21
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 158 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 21
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 158 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 21
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,148
Number of Sequences: 27780
Number of extensions: 303405
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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