Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30280X
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    29   0.033
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    29   0.033
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 261 SVNEWPFDIRRRTRLFVRTPCFI 193
           +V+EWP  +R+R  LF+   CF+
Sbjct: 403 AVDEWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 261 SVNEWPFDIRRRTRLFVRTPCFI 193
           +V+EWP  +R+R  LF+   CF+
Sbjct: 456 AVDEWPRLLRKRKELFIAIVCFV 478


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 505 GKRTLNPDIRHL 540
           GK T++PD RHL
Sbjct: 744 GKPTISPDSRHL 755


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  RMGAEVEADQLGDEWKGYV 154
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 407  VPNVLPKSVSCSTLAKKMMYV 469
            VP++ P+ V C+ L  + + V
Sbjct: 1110 VPSIPPEDVRCAALTSQSLQV 1130


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 407  VPNVLPKSVSCSTLAKKMMYV 469
            VP++ P+ V C+ L  + + V
Sbjct: 1106 VPSIPPEDVRCAALTSQSLQV 1126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,783
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)