Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30280X
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 116 2e-26
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 112 1e-25
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 31 0.42
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 29 2.2
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 29 3.0
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 3.0
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 5.2
At1g21390.1 68414.m02676 expressed protein 28 5.2
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 27 6.8
At1g03780.2 68414.m00358 targeting protein-related similar to mi... 27 6.8
At1g03780.1 68414.m00359 targeting protein-related similar to mi... 27 6.8
At4g31240.2 68417.m04435 expressed protein 27 9.0
At4g31240.1 68417.m04434 expressed protein 27 9.0
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 116 bits (278), Expect = 2e-26
Identities = 60/95 (63%), Positives = 70/95 (73%), Gaps = 3/95 (3%)
Frame = +1
Query: 265 RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFN 444
RR GER+RKSVRGCIV +LSVL LVIV+KG ++PGLTD PR GPKRASKIRKLFN
Sbjct: 89 RRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFN 148
Query: 445 LSKEDDVRRYV--VKRVLPAKEGKRTLN-PDIRHL 540
L KEDDVR+YV +R K+GK+ P I+ L
Sbjct: 149 LGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRL 183
Score = 111 bits (267), Expect = 3e-25
Identities = 49/80 (61%), Positives = 61/80 (76%)
Frame = +2
Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 188 FPMKQGVLTNSRVRLLMSKG 247
FPMKQGVLT RVRLL+ +G
Sbjct: 61 FPMKQGVLTPGRVRLLLHRG 80
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 510 ENAKPRHKAPKIQRLVTPVVLQR 578
+ K KAPKIQRLVTP+ LQR
Sbjct: 169 KKGKKVSKAPKIQRLVTPLTLQR 191
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 112 bits (270), Expect = 1e-25
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +2
Query: 8 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 187
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 188 FPMKQGVLTNSRVRLLMSKG 247
FPMKQGVLT RVRLL+ +G
Sbjct: 61 FPMKQGVLTPGRVRLLLHRG 80
Score = 112 bits (270), Expect = 1e-25
Identities = 60/95 (63%), Positives = 68/95 (71%), Gaps = 3/95 (3%)
Frame = +1
Query: 265 RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFN 444
RR GER+RKSVRGCIV +LSVL LVIV+KG ++PGLTD PR GPKRASKIRKLFN
Sbjct: 89 RRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFN 148
Query: 445 LSKEDDVRRYV--VKRVLPAKEGKRTLN-PDIRHL 540
L KEDDVR YV +R K+GK P I+ L
Sbjct: 149 LKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRL 183
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 510 ENAKPRHKAPKIQRLVTPVVLQR 578
+ K KAPKIQRLVTP+ LQR
Sbjct: 169 KKGKEVSKAPKIQRLVTPLTLQR 191
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 31.5 bits (68), Expect = 0.42
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 235 DVKGPLIYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLG 408
DV G I + + G ++ RG + + S AL + GA PG +P R+G
Sbjct: 164 DVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMG 221
Query: 409 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 507
R +KIRKL + + ++ ++K LP K G
Sbjct: 222 GTR-TKIRKLKIVKVDKELNVVMIKGALPGKPG 253
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 44 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 139
+KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 376 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE 504
+ +G+V ++ ++A + K + KEDDVR+ +KR+ K+
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKK 330
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 29 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 196
P CQ + V D + FYEK G E+ + E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 364 EIPGLTDGNVPRRLGPKRASKIRKL 438
E+PGL D V L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644
>At1g21390.1 68414.m02676 expressed protein
Length = 248
Score = 27.9 bits (59), Expect = 5.2
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +1
Query: 145 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPLIYRPRRD-GERKRKSVRGCIVDAN 321
G+C+ WR + P RP+ S D K I R +R+ E K C
Sbjct: 28 GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSKMPESCY---E 84
Query: 322 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 471
LS+ LV V+ + + D +P+R R SK+ + K D R
Sbjct: 85 LSLKDLVEVKVNQENERKVFD-ELPKR--ANRQSKVVRKTKSDKRVDPNR 131
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 240 QRATHLQTAPRWREKT*ISSWMYC*RQSLGLGSCYCAQGCPGNS 371
Q TH + P + K I+SW+ R +L SC+ G +S
Sbjct: 284 QVLTHQELIPNYTVKAMIASWLEANRINLATNSCHQYDGGDASS 327
>At1g03780.2 68414.m00358 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 725
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 229 SSDVKGPLIYRPRRDGERK---RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 399
+S +K P RP+ + K +KSV+G N++ +I A + L DG +
Sbjct: 183 ASLLKNPSTLRPKNQSQAKGSHQKSVKGETNLNNIASTTNLIQENQAIKRQKLDDGKSRQ 242
Query: 400 RLGPKRASKIRKLFN 444
L PK A+ + K N
Sbjct: 243 ILNPKPATLLHKTRN 257
>At1g03780.1 68414.m00359 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 687
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 229 SSDVKGPLIYRPRRDGERK---RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 399
+S +K P RP+ + K +KSV+G N++ +I A + L DG +
Sbjct: 183 ASLLKNPSTLRPKNQSQAKGSHQKSVKGETNLNNIASTTNLIQENQAIKRQKLDDGKSRQ 242
Query: 400 RLGPKRASKIRKLFN 444
L PK A+ + K N
Sbjct: 243 ILNPKPATLLHKTRN 257
>At4g31240.2 68417.m04435 expressed protein
Length = 392
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 202 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 101
L H VVA + +K + + I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213
>At4g31240.1 68417.m04434 expressed protein
Length = 392
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 202 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 101
L H VVA + +K + + I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,433
Number of Sequences: 28952
Number of extensions: 286850
Number of successful extensions: 791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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