Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30279
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    28   1.0  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   9.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   9.3  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 115 YLTKNDRVSYKSVHTYNIRKF 53
           YLTKN R+S   ++T N+R F
Sbjct: 407 YLTKNGRISISGLNTSNVRYF 427


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 632 FYKTSNSTVIALHFNLYRSFIVTNYNHQINSNM**NCTAVSQ 507
           FY+ S S  + LH +LY +FI T     ++S+   N   +SQ
Sbjct: 58  FYEFSGSPALLLHPDLYSTFIHTGIATIVSSSDNDNKICISQ 99


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 626 KTSNSTVIALHFNLYRSFIVTNYNHQI 546
           K   S +I L FN+  +F V  +NH I
Sbjct: 3   KKFQSKLINLQFNIILTFFVYEWNHDI 29


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 14  RIVYLDLFLKTRFEFSYV 67
           RI YL LFLK   +F Y+
Sbjct: 268 RISYLALFLKNTLQFGYI 285


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 2   KAISRIVYLDLFLKTRFEFSYVVSMYRFIADTIVF 106
           K +S I+  D+  K RF+ +  +S+Y  I D  +F
Sbjct: 319 KVLSEILRDDMLKKQRFDENKYLSLYDLIHDNNLF 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,655
Number of Sequences: 5004
Number of extensions: 54409
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)