Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30279
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305     29   4.2  
10_06_0140 + 11147019-11147791,11148301-11150524                       27   9.7  

>06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305
          Length = 160

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 259 YTFKIRYNNKLFCGFGIESDVLFRSWGMRLRHQH-HLVCN*DFMCNIESNKY 411
           Y F    N    CGF    + + RS  ++L+++   +VC   F+ N+E+  Y
Sbjct: 58  YRFDAAKNEHYVCGFAKSVESIPRSIYLKLKYETVDVVCMKSFLVNLEARLY 109


>10_06_0140 + 11147019-11147791,11148301-11150524
          Length = 998

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +1

Query: 94  HDRFSLDTNLNSSAKLIN-SLITPLMTVL*PRIQ-CYTRNVILCFFIYELLLFSSFNYTF 267
           H R SLD  ++S  +L+N S+I P+       ++ C T  ++L F +++ +  +   + +
Sbjct: 440 HHRSSLDVAIDSFEELVNRSIIQPVDVSSNTEVKTCQTHGMMLEFILHKSICDNFITFLY 499

Query: 268 -KIRYNNKLFC 297
            + R  +K+ C
Sbjct: 500 GQARLPDKIRC 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,293,546
Number of Sequences: 37544
Number of extensions: 268255
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)