Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30279
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   7.5  
SB_21113| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +3

Query: 447  IFKIFLEFFLSIYSQLLIMFL*NSSAVLLHITVYLVIIVCYYKRSVKI 590
            +F + +  F++++S ++I+F+   S ++L ITV+ VII+     SV I
Sbjct: 1111 VFSVII-LFITVFS-VIILFITVFSVIILFITVFSVIILFITVFSVTI 1156


>SB_21113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 288 TILWVWYRVRCLVSLLGNEIA 350
           T+ WV+Y +  +++++GN +A
Sbjct: 72  TVYWVFYNIIAIITIIGNSLA 92


>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1642

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 103 FSLDTNLNSSAKLINSLITPLMTVL*PRIQCYTRNVILCFFIYELLLFSSFNYTFKIRYN 282
           FSL          +NS++ PL   L      Y    IL F ++ +L+F +F ++ +  Y+
Sbjct: 659 FSLACRFTGRGAHVNSILGPLQLSL-----YYLLVDILKFLVFFVLIFMAFGFSLRRLYS 713

Query: 283 N 285
           N
Sbjct: 714 N 714


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 540 TVYLVIIVCYYKRSVKIKM 596
           TVYLVI+V +Y R +K KM
Sbjct: 789 TVYLVIVVIFYFRRLKRKM 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,471
Number of Sequences: 59808
Number of extensions: 355643
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)