Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30279
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 226 IYELLLFSSFNYTFKIRYNNKLF 294
           + E +LF + + TFK+ ++N+ F
Sbjct: 165 VREEILFDTVHVTFKLTFDNRAF 187


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 236 FYYFLHLTILLKYVI 280
           FY+FLH  +L +Y +
Sbjct: 257 FYFFLHKQVLNRYYL 271


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 236 FYYFLHLTILLKYVI 280
           FY+FLH  +L +Y +
Sbjct: 257 FYFFLHKQVLNRYYL 271


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 475 CPYIANF*SCFCETAVQFYYI 537
           C Y   F  C+ E + + YY+
Sbjct: 124 CEYAYRFNKCYAELSPRTYYL 144


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 485 IYGQKKFQKYLENKIFLPIRSL 420
           +Y Q     ++ N  FLP+RSL
Sbjct: 871 LYLQNNLIGFIGNLTFLPLRSL 892


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 315 RCLVSLLGNEIAPSAPSGVQLRLYVQ 392
           +CL+  L   + P+ P+   LRL +Q
Sbjct: 169 KCLIEALDAILPPTRPTDKALRLPLQ 194


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 315 RCLVSLLGNEIAPSAPSGVQLRLYVQ 392
           +CL+  L   + P+ P+   LRL +Q
Sbjct: 226 KCLIEALDAILPPTRPTDKALRLPLQ 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,360
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)