Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30279
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    30   1.5  
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /...    29   3.5  

>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +1

Query: 82  IYS*HDRFSLDTNLNSSAKLINSLITPLMTVL*PRIQCYTRNVILCFFIYELLLFSSFNY 261
           IY  H     +   ++  KLI+ L  P  TV    + C++++++ C F+ + + F +FN 
Sbjct: 289 IYFYHIYLHYERQFSAVEKLISFL--PQFTVQFALVFCFSQDLVFCIFL-QTVAFVTFNK 345

Query: 262 TFKIRYNNKLFC 297
               +Y    +C
Sbjct: 346 VITAQYFVWFYC 357


>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 276

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 445 KYSFL*DHYDTNICLIQ--CCT*SLNCTPDGADGAISFPKSETRHRTLYQTHKIVYC 281
           K+ F  +HY    C I+  CC    +C     D A S P  + RH  + Q  K V C
Sbjct: 19  KFQFGCEHYKRR-CKIRAPCCNLIFSCRHCHNDSANSLPDPKERHDLVRQNVKQVVC 74


>At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 434

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 229 YELLLFSSFNYTFKIRYNNKLFCGFGIESDVLFRSW-GMRLRHQHHLVCN*DFMCNIESN 405
           Y   L S   Y   +  N + F    + SD+ F SW     +H HHL  + DF   ++SN
Sbjct: 293 YANFLSSPEGYFHTVICNAREFTNTTVNSDLHFISWDNPPKQHPHHLTLD-DFQRMVDSN 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,643
Number of Sequences: 28952
Number of extensions: 248309
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)