Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30276X
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 146 9e-37
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 142 2e-35
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 46 2e-06
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 38 3e-04
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 0.64
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 1.5
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 1.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 2.0
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 2.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 2.6
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 24 6.0
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 24 6.0
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces... 24 6.0
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 24 7.9
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 24 7.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 146 bits (354), Expect = 9e-37
Identities = 62/84 (73%), Positives = 74/84 (88%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAV MLSNTT+
Sbjct: 328 IPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTS 387
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
IA AW+RLDHKFDLMY+KRAFVHW
Sbjct: 388 IAEAWSRLDHKFDLMYSKRAFVHW 411
Score = 60.1 bits (139), Expect = 1e-10
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL++DYEEVG DS +
Sbjct: 413 VGEGMEEGEFSEAREDLAALERDYEEVGQDSMD 445
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 142 bits (343), Expect = 2e-35
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAV MLSNTT+
Sbjct: 324 IPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTS 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
IA AW+RLDHKFDLMY+KRAFVHW
Sbjct: 384 IAEAWSRLDHKFDLMYSKRAFVHW 407
Score = 61.3 bits (142), Expect = 4e-11
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL++DYEEVG DS E
Sbjct: 409 VGEGMEEGEFSEAREDLAALERDYEEVGQDSME 441
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 46.0 bits (104), Expect = 2e-06
Identities = 24/82 (29%), Positives = 43/82 (52%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ I +++TK + FV+W P + PP DL + + + N+T+I
Sbjct: 324 KEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ RL +F M+ ++AF+HW
Sbjct: 376 EIFRRLGDQFSAMFRRKAFLHW 397
Score = 32.3 bits (70), Expect = 0.023
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAR---EELAALDKDYEEVGIDSAE 353
R+ F GEGM+E EF+EA +L + + Y+E GID +
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGD 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 38.3 bits (85), Expect = 3e-04
Identities = 20/81 (24%), Positives = 42/81 (51%)
Frame = +1
Query: 4 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAI 183
P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +ML+N T+I
Sbjct: 330 PADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSG-----LMLANHTSI 384
Query: 184 AGAWARLDHKFDLMYAKRAFV 246
A + R ++D + + AF+
Sbjct: 385 ASLFKRTLDQYDRLRKRNAFL 405
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 27.5 bits (58), Expect = 0.64
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +2
Query: 26 SLPSKPSV---LSNSSTGVQPVSRSESTTSHP 112
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 1.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 5 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSESTTSHPPWCP 124
P + RP++P P LS V PV+ + PP P
Sbjct: 557 PSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 1.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -1
Query: 323 ILIEG----SQFLTGFGELSLLHTLTDYQCTKARLAYMRSNLWSRRAQAPA 183
+++EG S+FL F LSL+ ++ + + + +LW+ + APA
Sbjct: 405 VIVEGPVWDSKFLPDFNCLSLIEPISSFSASTYLQIDPKEDLWASQDTAPA 455
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 252 VVGEGMEEGEFSEAREELAALDKDYEEV 335
++ EG EE E EA E + D+D EE+
Sbjct: 196 LIDEGEEEEEREEAELEFVSDDEDEEEI 223
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 2.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 5 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSESTTSHPP 115
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 23 PSLPSKPSVLSNSSTGVQPVSRSES 97
PS+P P +NSST + VS+ ES
Sbjct: 755 PSMPPAPLTHANSSTPMNYVSQPES 779
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 27 RYHQNQAYYPIRRLVSNRFQGRNQLPATHRGARRR 131
RY + Y + + +++ GR+ P +HR A +
Sbjct: 77 RYQERDREYARSKNIPDQYIGRSPRPTSHRHAEEK 111
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 24.2 bits (50), Expect = 6.0
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 150
KDVN + TI +W PTG ++ Y V D VQR
Sbjct: 157 KDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GNVQR 202
>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 262 RVWRRESSPKPVRNWLPSIRIT 327
R W + PK V W P+++ T
Sbjct: 8 RFWNHPAGPKTVHFWAPAMKWT 29
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 23.8 bits (49), Expect = 7.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -2
Query: 145 EPWPSRLRAPRWV 107
+ WPS++ P+WV
Sbjct: 157 DSWPSKITLPKWV 169
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 17 TRPSLPSKPSVLSNSSTGVQPVSRSESTTSHPPWCPEAT 133
T+P+ +K ++L + + V + E+ PP P+A+
Sbjct: 728 TKPNTDAKTNLLPEKTFNEEAVKQKETEKEVPPTGPKAS 766
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect = 7.9
Identities = 18/74 (24%), Positives = 28/74 (37%)
Frame = +2
Query: 35 SKPSVLSNSSTGVQPVSRSESTTSHPPWCPEATWPRFNVXXXXXXXXXXXXELGLALTTS 214
S P+ S + PVS ++ T + PP A R N + A T S
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 215 STSCTPSVLSCTGS 256
++ PS ++ S
Sbjct: 1059 ASKPAPSTVTSAAS 1072
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,446
Number of Sequences: 5004
Number of extensions: 26388
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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