BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30276X (353 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 146 9e-37 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 142 2e-35 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 46 2e-06 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 38 3e-04 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 0.64 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 1.5 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 1.5 SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 2.0 SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 2.0 SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 2.6 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 24 6.0 SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 24 6.0 SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces... 24 6.0 SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 24 7.9 SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 24 7.9 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 7.9 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 146 bits (354), Expect = 9e-37 Identities = 62/84 (73%), Positives = 74/84 (88%) Frame = +1 Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180 +P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAV MLSNTT+ Sbjct: 328 IPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTS 387 Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252 IA AW+RLDHKFDLMY+KRAFVHW Sbjct: 388 IAEAWSRLDHKFDLMYSKRAFVHW 411 Score = 60.1 bits (139), Expect = 1e-10 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = +3 Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353 VGEGMEEGEFSEARE+LAAL++DYEEVG DS + Sbjct: 413 VGEGMEEGEFSEAREDLAALERDYEEVGQDSMD 445 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 142 bits (343), Expect = 2e-35 Identities = 61/84 (72%), Positives = 72/84 (85%) Frame = +1 Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180 +P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAV MLSNTT+ Sbjct: 324 IPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTS 383 Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252 IA AW+RLDHKFDLMY+KRAFVHW Sbjct: 384 IAEAWSRLDHKFDLMYSKRAFVHW 407 Score = 61.3 bits (142), Expect = 4e-11 Identities = 28/33 (84%), Positives = 31/33 (93%) Frame = +3 Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353 VGEGMEEGEFSEARE+LAAL++DYEEVG DS E Sbjct: 409 VGEGMEEGEFSEAREDLAALERDYEEVGQDSME 441 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 46.0 bits (104), Expect = 2e-06 Identities = 24/82 (29%), Positives = 43/82 (52%) Frame = +1 Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186 K+V+ I +++TK + FV+W P + PP DL + + + N+T+I Sbjct: 324 KEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQ 375 Query: 187 GAWARLDHKFDLMYAKRAFVHW 252 + RL +F M+ ++AF+HW Sbjct: 376 EIFRRLGDQFSAMFRRKAFLHW 397 Score = 32.3 bits (70), Expect = 0.023 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +3 Query: 228 RQACFRALVVGEGMEEGEFSEAR---EELAALDKDYEEVGIDSAE 353 R+ F GEGM+E EF+EA +L + + Y+E GID + Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGD 434 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 38.3 bits (85), Expect = 3e-04 Identities = 20/81 (24%), Positives = 42/81 (51%) Frame = +1 Query: 4 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAI 183 P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +ML+N T+I Sbjct: 330 PADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSG-----LMLANHTSI 384 Query: 184 AGAWARLDHKFDLMYAKRAFV 246 A + R ++D + + AF+ Sbjct: 385 ASLFKRTLDQYDRLRKRNAFL 405 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 27.5 bits (58), Expect = 0.64 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = +2 Query: 26 SLPSKPSV---LSNSSTGVQPVSRSESTTSHP 112 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 26.2 bits (55), Expect = 1.5 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +2 Query: 5 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSESTTSHPPWCP 124 P + RP++P P LS V PV+ + PP P Sbjct: 557 PSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 26.2 bits (55), Expect = 1.5 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -1 Query: 323 ILIEG----SQFLTGFGELSLLHTLTDYQCTKARLAYMRSNLWSRRAQAPA 183 +++EG S+FL F LSL+ ++ + + + +LW+ + APA Sbjct: 405 VIVEGPVWDSKFLPDFNCLSLIEPISSFSASTYLQIDPKEDLWASQDTAPA 455 >SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizosaccharomyces pombe|chr 1|||Manual Length = 302 Score = 25.8 bits (54), Expect = 2.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 252 VVGEGMEEGEFSEAREELAALDKDYEEV 335 ++ EG EE E EA E + D+D EE+ Sbjct: 196 LIDEGEEEEEREEAELEFVSDDEDEEEI 223 >SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces pombe|chr 2|||Manual Length = 476 Score = 25.8 bits (54), Expect = 2.0 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = +2 Query: 5 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSESTTSHPP 115 PR LP K VL T + VSR TTS P Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329 >SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccharomyces pombe|chr 2|||Manual Length = 884 Score = 25.4 bits (53), Expect = 2.6 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 23 PSLPSKPSVLSNSSTGVQPVSRSES 97 PS+P P +NSST + VS+ ES Sbjct: 755 PSMPPAPLTHANSSTPMNYVSQPES 779 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 24.2 bits (50), Expect = 6.0 Identities = 9/35 (25%), Positives = 18/35 (51%) Frame = +3 Query: 27 RYHQNQAYYPIRRLVSNRFQGRNQLPATHRGARRR 131 RY + Y + + +++ GR+ P +HR A + Sbjct: 77 RYQERDREYARSKNIPDQYIGRSPRPTSHRHAEEK 111 >SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 793 Score = 24.2 bits (50), Expect = 6.0 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = +1 Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 150 KDVN + TI +W PTG ++ Y V D VQR Sbjct: 157 KDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GNVQR 202 >SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 118 Score = 24.2 bits (50), Expect = 6.0 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = +1 Query: 262 RVWRRESSPKPVRNWLPSIRIT 327 R W + PK V W P+++ T Sbjct: 8 RFWNHPAGPKTVHFWAPAMKWT 29 >SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 429 Score = 23.8 bits (49), Expect = 7.9 Identities = 6/13 (46%), Positives = 10/13 (76%) Frame = -2 Query: 145 EPWPSRLRAPRWV 107 + WPS++ P+WV Sbjct: 157 DSWPSKITLPKWV 169 >SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces pombe|chr 1|||Manual Length = 1159 Score = 23.8 bits (49), Expect = 7.9 Identities = 10/39 (25%), Positives = 21/39 (53%) Frame = +2 Query: 17 TRPSLPSKPSVLSNSSTGVQPVSRSESTTSHPPWCPEAT 133 T+P+ +K ++L + + V + E+ PP P+A+ Sbjct: 728 TKPNTDAKTNLLPEKTFNEEAVKQKETEKEVPPTGPKAS 766 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 23.8 bits (49), Expect = 7.9 Identities = 18/74 (24%), Positives = 28/74 (37%) Frame = +2 Query: 35 SKPSVLSNSSTGVQPVSRSESTTSHPPWCPEATWPRFNVXXXXXXXXXXXXELGLALTTS 214 S P+ S + PVS ++ T + PP A R N + A T S Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058 Query: 215 STSCTPSVLSCTGS 256 ++ PS ++ S Sbjct: 1059 ASKPAPSTVTSAAS 1072 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,444,446 Number of Sequences: 5004 Number of extensions: 26388 Number of successful extensions: 138 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 105935336 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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