Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30276X
(353 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 163 2e-41
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 163 2e-41
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 163 3e-41
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 163 3e-41
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 163 3e-41
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 157 2e-39
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 122 5e-29
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 47 3e-06
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 45 1e-05
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 45 2e-05
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 45 2e-05
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 45 2e-05
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 45 2e-05
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 43 5e-05
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 43 7e-05
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 42 9e-05
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 38 0.003
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 29 1.2
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 27 3.6
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi... 27 4.7
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 27 4.7
At5g20200.1 68418.m02406 nucleoporin-related contains weak simil... 23 5.3
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 26 6.3
At3g44460.1 68416.m04779 basic leucine zipper transcription fact... 26 6.3
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c... 26 6.3
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 26 6.3
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si... 26 8.3
At5g14660.2 68418.m01718 peptide deformylase, chloroplast / poly... 26 8.3
At5g14660.1 68418.m01717 peptide deformylase, chloroplast / poly... 26 8.3
At4g24015.1 68417.m03451 zinc finger (RING-H2 type) protein-rela... 26 8.3
At4g18240.1 68417.m02709 starch synthase-related protein contain... 26 8.3
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 26 8.3
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 26 8.3
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 26 8.3
At1g49270.1 68414.m05524 protein kinase family protein contains ... 26 8.3
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 163 bits (397), Expect = 2e-41
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAV M+SN TA
Sbjct: 324 VPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTA 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
+A ++R+DHKFDLMYAKRAFVHW
Sbjct: 384 VAEVFSRIDHKFDLMYAKRAFVHW 407
Score = 59.3 bits (137), Expect = 7e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL+KDYEEVG + +
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAEGGD 441
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 163 bits (397), Expect = 2e-41
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAV M+SN TA
Sbjct: 324 VPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTA 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
+A ++R+DHKFDLMYAKRAFVHW
Sbjct: 384 VAEVFSRIDHKFDLMYAKRAFVHW 407
Score = 59.3 bits (137), Expect = 7e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL+KDYEEVG + +
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAEGGD 441
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 163 bits (396), Expect = 3e-41
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAV M+SN+T+
Sbjct: 324 VPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
+A ++R+DHKFDLMYAKRAFVHW
Sbjct: 384 VAEVFSRIDHKFDLMYAKRAFVHW 407
Score = 59.3 bits (137), Expect = 7e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL+KDYEEVG + +
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAEGGD 441
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 163 bits (396), Expect = 3e-41
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAV M+SN+T+
Sbjct: 324 VPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
+A ++R+DHKFDLMYAKRAFVHW
Sbjct: 384 VAEVFSRIDHKFDLMYAKRAFVHW 407
Score = 59.3 bits (137), Expect = 7e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL+KDYEEVG + +
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAEGGD 441
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 163 bits (396), Expect = 3e-41
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAV M+SN+T+
Sbjct: 324 VPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
+A ++R+DHKFDLMYAKRAFVHW
Sbjct: 384 VAEVFSRIDHKFDLMYAKRAFVHW 407
Score = 59.3 bits (137), Expect = 7e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL+KDYEEVG + +
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAEGGD 441
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (381), Expect = 2e-39
Identities = 68/84 (80%), Positives = 76/84 (90%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAV M+SN TA
Sbjct: 324 VPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTA 383
Query: 181 IAGAWARLDHKFDLMYAKRAFVHW 252
+A ++R+DHKFDLMY+KRAFVHW
Sbjct: 384 VAEVFSRIDHKFDLMYSKRAFVHW 407
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = +3
Query: 255 VGEGMEEGEFSEAREELAALDKDYEEVGIDSAE 353
VGEGMEEGEFSEARE+LAAL+KDYEEVG + AE
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGGEGAE 441
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 122 bits (295), Expect = 5e-29
Identities = 54/62 (87%), Positives = 59/62 (95%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTA 180
VPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAV M+SN+T+
Sbjct: 324 VPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Query: 181 IA 186
+A
Sbjct: 384 VA 385
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ I ++ K + FV+W P K + PPT ++ A + N+T+I
Sbjct: 325 KEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFVGNSTSIQ 376
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 377 EMFRRVSEQFTAMFRRKAFLHW 398
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 391 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ I I+ K + FV+W P K + PP ++ A + N+T+I
Sbjct: 325 KEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMAATFVGNSTSIQ 376
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 377 EMFRRVSEQFTAMFRRKAFLHW 398
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 391 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + ++ K + FV+W P K + PPT ++ A + N+T+I
Sbjct: 324 KEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + ++ K + FV+W P K + PPT ++ A + N+T+I
Sbjct: 324 KEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + ++ K + FV+W P K + PPT ++ A + N+T+I
Sbjct: 324 KEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + ++ K + FV+W P K + PPT ++ A + N+T+I
Sbjct: 324 KEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + I+ K + FV+W P K + + P G ++ A + N+T+I
Sbjct: 324 KEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----DIAPKG----LKMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 42.7 bits (96), Expect = 7e-05
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + ++ K + FV+W P K + + P G ++ A + N+T+I
Sbjct: 324 KEVDEQMMNVQNKNSSYFVEWIPNNVKSSVC----DIAPTG----LKMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 42.3 bits (95), Expect = 9e-05
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = +1
Query: 7 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAIA 186
K+V+ + ++ K + FV+W P K + + P G + A + N+T+I
Sbjct: 324 KEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQ 375
Query: 187 GAWARLDHKFDLMYAKRAFVHW 252
+ R+ +F M+ ++AF+HW
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHW 397
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 RQACFRALVVGEGMEEGEFSEAREELAALDKDYEE 332
R+ F GEGM+E EF+EA + L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/81 (23%), Positives = 44/81 (54%)
Frame = +1
Query: 4 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVIMLSNTTAI 183
P V+ ++ I+ ++ + F+DW P +V ++ + P V ++ +ML++ T+I
Sbjct: 332 PTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSG-----LMLASHTSI 386
Query: 184 AGAWARLDHKFDLMYAKRAFV 246
++R ++D + K+AF+
Sbjct: 387 RHLFSRCLSQYDKLRKKQAFL 407
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 105 LVVDSDLETGWTPVDELDSTLGFDGSDGRVHILGY 1
LV D++L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 26 SLPSKPSVLSNSSTGVQPVSRSESTTSHPPW 118
++P P+V +++ TG QP + ES ++ P +
Sbjct: 348 AVPYAPTVEADTGTGTQPAGKLESISAMPAY 378
>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
PF05669 SOH1
Length = 196
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 318 YRGQPVPHGLRRTLPPPYPHRLPVHEST 235
YR + H L R LP P P + PV ST
Sbjct: 122 YRNNRLKHILPRPLPEPVPPQPPVAPST 149
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 VPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 132
V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 312 VSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At5g20200.1 68418.m02406 nucleoporin-related contains weak
similarity to Nucleoporin NUP1 (Nuclear pore protein
NUP1) (Swiss-Prot:P20676) [Saccharomyces cerevisiae]
Length = 762
Score = 23.4 bits (48), Expect(2) = 5.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 38 KPSVLSNSSTGVQ-PVSRSESTTSHPPWCP 124
K +V S S+ G PVS S+ TTS P P
Sbjct: 639 KWAVPSGSNAGFTFPVSSSDGTTSSEPTTP 668
Score = 21.4 bits (43), Expect(2) = 5.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 206 TTSSTSCTPSVLSCTGSR*GYGGGRV 283
TTSS TPS++ T S GG V
Sbjct: 660 TTSSEPTTPSIMPFTTSPPVASGGGV 685
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 256 SVRVWRRESSPKPVRNWLPSIRITKKSALTPL 351
+V+VW+RE K ++ L + + +++A+T L
Sbjct: 299 TVKVWKRELQGKGTKHTLAQVLLKQENAVTAL 330
>At3g44460.1 68416.m04779 basic leucine zipper transcription factor
(BZIP67) identical to basic leucine zipper transcription
factor GI:18656053 from [Arabidopsis thaliana];
identical to cDNA basic leucine zipper transcription
factor (atbzip67 gene) GI:18656052
Length = 331
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 150 TLNLGQVASGHHGGWLVVDSDLETGWTPVDELDSTLGFDGSDG 22
TL+ Q+ SG G + +D L WT V+E D+ G +DG
Sbjct: 45 TLDEIQMKSGKSFGAMNMDEFLANLWTTVEENDNEGGGAHNDG 87
>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 281
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 20 RPSLPSKPSVLSNSSTGVQPVSRSESTTSHP 112
RP P++PS+ +SS+ P +S HP
Sbjct: 39 RPPSPTRPSIPVSSSSSSSPFMQSNLPPLHP 69
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
Pfam profile PF00018: SH3 domain
Length = 1196
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 29 LPSKPSVLSNSSTGVQPVSRSESTTSH 109
+P++ + S SST QP S S S++SH
Sbjct: 20 VPAQSTSSSASSTASQPTSASASSSSH 46
>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
similar to OpdB [Treponema denticola] GI:13786054;
contains Pfam profiles PF00326: prolyl oligopeptidase
family, PF02897: Prolyl oligopeptidase, N-terminal
beta-propeller domain
Length = 792
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 351 QRSQCRLLRNPYRGQPVPHGLRRTLPPPYPHRLPVHEST 235
+R QCR + P P P PP P H++T
Sbjct: 17 RRQQCRCYKPPKSPPPPPPPPALPKPPKKPQSFTFHDAT 55
>At5g14660.2 68418.m01718 peptide deformylase, chloroplast /
polypeptide deformylase 1B (PDF1B) identical to
SP|Q9FUZ2 Peptide deformylase, chloroplast precursor (EC
3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis
thaliana}; supporting cDNA
gi|11320965|gb|AF269165.1|AF269165
Length = 273
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 267 MEEGEFSEAREELAALDKDYEE-VGIDSAE 353
M + REEL AL+K YEE G+ S E
Sbjct: 227 MTDQVLDSIREELEALEKKYEEKTGLPSPE 256
>At5g14660.1 68418.m01717 peptide deformylase, chloroplast /
polypeptide deformylase 1B (PDF1B) identical to
SP|Q9FUZ2 Peptide deformylase, chloroplast precursor (EC
3.5.1.88) (PDF) (Polypeptide deformylase) {Arabidopsis
thaliana}; supporting cDNA
gi|11320965|gb|AF269165.1|AF269165
Length = 273
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 267 MEEGEFSEAREELAALDKDYEE-VGIDSAE 353
M + REEL AL+K YEE G+ S E
Sbjct: 227 MTDQVLDSIREELEALEKKYEEKTGLPSPE 256
>At4g24015.1 68417.m03451 zinc finger (RING-H2 type) protein-related
low similarity to RING-H2 zinc finger protein ATL4
[Arabidopsis thaliana] GI:4928399
Length = 174
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 29 LPSKPSVLSNSSTGVQPVSRSESTTSHPP 115
L + S LS+ S + PVS S T+SH P
Sbjct: 46 LKRRASSLSSPSPMILPVSSSHQTSSHLP 74
>At4g18240.1 68417.m02709 starch synthase-related protein contains
similarity to starch synthase GI:4582783 from [Vigna
unguiculata]
Length = 1040
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 12 CERGHRYHQNQAYYPIRRLVSNRFQGRNQ 98
CER H + Y P RRLVS + R Q
Sbjct: 20 CEREHGSSRRFFYLPSRRLVSTSCKMRQQ 48
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = +1
Query: 256 SVRVWRRESSPKPVRNWLPSIRITKKSALTPL 351
+++VW+RE K +++L ++ + +++A+T L
Sbjct: 313 TLKVWKRELQGKGTKHFLVNVLMKQENAVTAL 344
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 312 GQPVPHGLRRTLPPPYPHRLPVH 244
GQ P + PPPYP +P H
Sbjct: 568 GQQHPRPVYYMHPPPYPQDMPYH 590
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 270 EEGEFSEAREELAALDKDYEEVGIDSAE 353
E E + EEL L+K+ EE+G +S E
Sbjct: 285 ERREKKKLEEELMELNKELEELGSESVE 312
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 23 PSLPSKPSVLSNSSTGVQPVSRSESTTSHPP 115
PS PS PS +T P S ++ TTS PP
Sbjct: 17 PSPPSPPSSNDQQTTSPPP-SDNQETTSPPP 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,765
Number of Sequences: 28952
Number of extensions: 156453
Number of successful extensions: 749
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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