Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30271
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    29   0.65 
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   2.6  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    27   3.5  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   3.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.6  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   4.6  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 174 EMYSEENKTFFVFRHXYNFPASLILTVTFYVQKAVEIF-NLKSDSNSV 34
           ++++    TFF + H Y++ A+ + T  F       +F NL+++S+ +
Sbjct: 413 QVFATAKVTFFQYLHDYSYIATFVFTYVFQALMLGSLFYNLRNESSEL 460


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 381 SMRIISRSGDQVSSAEIGENLVLQVDV 461
           S  I++  GD+V++ EIG+ +V+  D+
Sbjct: 99  SCGIVAEKGDEVNNLEIGDRVVIAFDL 125


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 10  DIQVECLADGVRVRLKIKDFNGLLYVKSYSKDERCRKVVXMPKDEESFVFFTVHF----- 174
           D  +E  ADG  +R+       +LYV+S   DE   KV   P D+  +  F +       
Sbjct: 320 DTCIEVQADGYYLRIVDLYEEPVLYVRSPDSDE--EKVYKYPNDDPYYSEFKIFLDAAEG 377

Query: 175 -GDCGLVH 195
            GD  L+H
Sbjct: 378 KGDKNLIH 385


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 337 VNMDTLNARVTFCSPVLYMHLMWNAFVVML 248
           +  D +  R+ + SPVL +   WN  VV++
Sbjct: 74  IKRDIVLCRIFYPSPVLSVRFTWNRLVVLI 103


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 291 TGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRSGDQVSSAEIGENLVLQVDVQPS 470
           +G    T      + TTAGT+    P PT S         Q ++       V+  D+ PS
Sbjct: 769 SGSVGFTTTIATPVGTTAGTVLIDVPTPTASSSPFPSCNTQCTNENSFRIQVINDDIYPS 828

Query: 471 SIY 479
            ++
Sbjct: 829 YVH 831


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 186 AAISEMYSEENKTFFVFRHXYNFPASLILTVTFYVQKAVEIFNLKSDSNSVSQTFD 19
           A I   +S+ N T F+F    +F A+L++T      +   I + +   N  + T+D
Sbjct: 150 AGIDTPFSQYNATKFLFAQDTDFQAALLITGNLTTNETSIIPSYEIYVNPSNSTYD 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,746
Number of Sequences: 5004
Number of extensions: 56298
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)