Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30271
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)                    31   0.91 
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.6  
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)               29   4.9  
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)                   29   4.9  
SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 28   8.5  

>SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)
          Length = 192

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 436 SPISAELTWSPEREIILMEQVGGGPVLAIVPAVVNMDTLNARV 308
           +P++ +     EREI+ ++ + GGPV  + PAV   + LNAR+
Sbjct: 91  NPVAEKAVQELEREILQLDPL-GGPVSEVAPAVATAN-LNARI 131


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 13  IQVECLADGVRVRLKIKDFNGLLYVKSYSKDERCRKVVXMPKDEESFVFFTVHFGDCGLV 192
           I+V C    + VRL ++ F  L        D  C+ VV      E+ VFF V    CG  
Sbjct: 412 IKVICSKHDMEVRLYMEYFERLSIDSLRLSDRACKPVVT----NETLVFFKVPLDGCGTA 467

Query: 193 H 195
           H
Sbjct: 468 H 468


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 475 ILDGWTSTCKTRFSPISAELTWSPEREIILMEQVGGGP 362
           +L   ++TCK  F    A +TW    E+  M  VGG P
Sbjct: 187 VLXNSSTTCKYHFQTEQAPVTWKTVMEMRRMMAVGGRP 224


>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
          Length = 635

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 294 GEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRSGDQVSSAE--IGENLVLQVDVQP 467
           G+ N  + F   + TT   +     PP+  +RII+  G   SS+   +  N+  + +VQ 
Sbjct: 418 GDPNAAITFE-EICTTINPLLEEHFPPSSGVRIIAEPGRYYSSSSFTLAVNVYSRREVQS 476

Query: 468 SSI 476
           SS+
Sbjct: 477 SSV 479


>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
          Length = 544

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 436 SPISAELTWSPEREIILMEQVGGGPVLAIVPAVVNMDTLNARV 308
           +P++ +     EREI+ ++ + GGPV  +  AVV  + LNAR+
Sbjct: 397 NPVAEKAVQELEREILQLDPL-GGPVSEVALAVVTAN-LNARI 437


>SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 VFFTVHFGDCGLVHVNGLASF 216
           V+  VHF  CG++ VNG A F
Sbjct: 354 VYGNVHFSTCGMMPVNGNAHF 374


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106  ERCRKVVXMPKDEESFVFFTVHF-GDCGLVHVNGLASFVLVMQTHLK 243
            +RC+K +    +E+  +F   +F GD  L+ + G A+   V+Q+HLK
Sbjct: 1417 QRCQKSLNEFLEEKRSLFPRFYFIGDDDLLEILGQATNPTVIQSHLK 1463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,412,710
Number of Sequences: 59808
Number of extensions: 437098
Number of successful extensions: 1188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)