Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30271
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 2   QHQIFRSNVWLTELESDLRLK 64
           ++QI +SNVWL  + +D +L+
Sbjct: 69  KNQIMKSNVWLRFIWTDYQLQ 89


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 183 RPCSCQWLSKLRSSNANSSETGNITTKAFHIKC 281
           +P  C++ SK  S   N S    I TK    KC
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKC 150


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 251 HHHKSIP--HQMHIQNW*TKRNSCIQCVHVNNSRHNRQYRPSAYLLHEN 391
           H+ +  P  H M + +    R+  I   H +   H   Y+ S YL++EN
Sbjct: 45  HYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYEN 93


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 302 KRNSCIQCVHVNNSRHNRQ 358
           +RNSC+       S+HN Q
Sbjct: 375 RRNSCLGSTETYYSKHNTQ 393


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 288 KTGEQNVTLAFNVSMLTTAGTIANT 362
           K   Q++T   NVS LTT  T  N+
Sbjct: 711 KESTQSLTTTGNVSYLTTNNTSNNS 735


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 360 YWRLCLLLL 334
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 360 YWRLCLLLL 334
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 360 YWRLCLLLL 334
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,611
Number of Sequences: 438
Number of extensions: 3864
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)