Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30269
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   2e-28
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.055
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.6  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  122 bits (294), Expect = 2e-28
 Identities = 64/101 (63%), Positives = 76/101 (75%), Gaps = 16/101 (15%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAI 132
           A+QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAI
Sbjct: 2   AEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAI 61

Query: 133 EGTYIDKKCPFTGNVSIXGRILTGVVQKMKMQRTIVIRRDY 255
           EGTYIDKKCPFTGNVSI GRILTG+ + MKM+RTI+IRRDY
Sbjct: 62  EGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDY 102



 Score =  101 bits (241), Expect = 4e-22
 Identities = 39/53 (73%), Positives = 49/53 (92%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 103 LHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 345 GDIVTIGECRPLSKTVRFNVLKV 413
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 148 QCRYPQSPLWEF*SLNQHSYGDACP 74
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 222 DAENYRDPPRLLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 344
           D + Y  PPRL+H+  + ++ ++       H+   F D E+
Sbjct: 54  DTDRYLPPPRLIHHAERGSKLQQDASQYQHHVKGNFSDDEL 94


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 338 HVPEARRQMHGHIPVPFLEP 279
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,975
Number of Sequences: 59808
Number of extensions: 280018
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)