Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30269
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   116   7e-27
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           114   3e-26
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           110   6e-25
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.56 
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.56 
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.1  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  116 bits (280), Expect = 7e-27
 Identities = 59/90 (65%), Positives = 66/90 (73%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61

Query: 166 TGNVSIXGRILTGVVQKMKMQRTIVIRRDY 255
           TG VSI GRIL+G     KMQRTI++RRDY
Sbjct: 62  TGTVSIRGRILSGTCHSAKMQRTIIVRRDY 91



 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY R+EKRH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  114 bits (274), Expect = 3e-26
 Identities = 57/90 (63%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61

Query: 166 TGNVSIXGRILTGVVQKMKMQRTIVIRRDY 255
           TG VSI GRIL G     KMQRTI++RRDY
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRDY 91



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/53 (67%), Positives = 44/53 (83%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY R+EKRH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  110 bits (264), Expect = 6e-25
 Identities = 57/90 (63%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61

Query: 166 TGNVSIXGRILTGVVQKMKMQRTIVIRRDY 255
           TG VSI GRIL G     KMQRTI++RR+Y
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRNY 91



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 37/53 (69%), Positives = 44/53 (83%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY R+EKRH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 43  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 171
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 267 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           PKY R  +  +    H  P     ++GD+V + + RP+SKT  F  L V
Sbjct: 77  PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSFVALPV 123


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 327 SKATNARTYSCAVSRTYCIWVGSEVIAADHDSSLHLHFLNDAG 199
           SK    + YSC +S  +  WV    +AA H+ S  + ++   G
Sbjct: 96  SKIIEEKRYSCIISSPFTPWV--PAVAASHNISCAILWIQACG 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,260
Number of Sequences: 28952
Number of extensions: 200035
Number of successful extensions: 451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)