Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30268
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.8  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.7  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.7  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 374 VTLEGTFAPQTGTKTGKLKTSFTND 448
           + L+    P TG+K GK +++F  D
Sbjct: 676 ILLKNLQNPSTGSKPGKPRSAFLTD 700


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 393 KVPSRVTLRPAAILSWIVMSVANVLSVFH 307
           K+P   TLRP  +L  I++ V  ++   H
Sbjct: 46  KIPFYSTLRPINLLVQIILDVILLILNVH 74


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 393 KVPSRVTLRPAAILSWIVMSVANVLSVFH 307
           K+P   TLRP  +L  I++ V  ++   H
Sbjct: 46  KIPFYSTLRPINLLVQIILDVILLILNVH 74


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 393 KVPSRVTLRPAAILSWIVMSVANVLSVFH 307
           K+P   TLRP  +L  I++ V  ++   H
Sbjct: 366 KIPFYSTLRPINLLVQIILDVILLILNVH 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,260
Number of Sequences: 336
Number of extensions: 4222
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)