Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30268
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    45   1e-05
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.4  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   9.5  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   9.5  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = +2

Query: 254 RLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKT 433
           +L + F  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L  
Sbjct: 55  KLETSFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNL 114

Query: 434 SFTNDTVAVNTNLD 475
              +  +  + +++
Sbjct: 115 EHQHPLIHTHASVN 128



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 90  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES 239
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF--NVSGNQDA 48



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 514 LNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKL 690
           + ++G+LAG    +D QK   S     +GY +   ++     N    F  S Y +VS  +
Sbjct: 140 VGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDV 199

Query: 691 DCG 699
           + G
Sbjct: 200 EAG 202


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 544 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 684
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 374  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 478
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 233 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 126
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 656 AVQSTRRYLTSWTAASHE 709
           A+Q  R YL++WT   HE
Sbjct: 364 ALQLNRNYLSAWTLMGHE 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,856
Number of Sequences: 5004
Number of extensions: 69565
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)