Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30268
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    36   0.038
01_03_0262 - 14387045-14387187,14387334-14387420,14387439-14387496     29   5.7  
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    28   7.6  
02_05_0468 + 29287867-29287872,29289114-29289156,29289324-292894...    28   7.6  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   7.6  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   10.0 
05_03_0373 - 13194723-13195847,13196219-13196809                       28   10.0 

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +3

Query: 90  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGAFPPN 269
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG     
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 270 LQ*KTM 287
           L+ K +
Sbjct: 58  LKNKKL 63



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 538 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKV 678
           GV   FDT  + F+K N AL   + D   +LH N ++G     S Y  V
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLV 189


>01_03_0262 - 14387045-14387187,14387334-14387420,14387439-14387496
          Length = 95

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 790 LGVQRRVLVRAYFAPTPNNVSAEPAVHFM*RRSP 689
           + +  +VLV+ +F+ T NN++AE   H    +SP
Sbjct: 43  IALYEKVLVKYFFSSTTNNLTAEKKFHHFCFQSP 76


>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 538 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVS 681
           G    FDT    F+K N  L + + D      ++N G     S Y KVS
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344


>02_05_0468 +
           29287867-29287872,29289114-29289156,29289324-29289450,
           29289615-29289703,29289794-29289854,29289944-29290011,
           29290099-29290227,29291020-29291126,29291210-29291557,
           29291803-29291883,29291905-29291952,29292331-29292496,
           29292609-29292652
          Length = 438

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 593 AKLFLENLAFCVSNWVCT 540
           A L + NL+ C SNW CT
Sbjct: 99  AGLIIRNLSICTSNWRCT 116


>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
            12568932-12569175,12569480-12569766,12570618-12571103,
            12571348-12571459,12571540-12571745,12573071-12573276,
            12573831-12574162,12574284-12574825,12574967-12576308,
            12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 181  RPRASLVLNSPAGSPPTRKAERFLAPFLQICSER 282
            RP A  +L S    P  R A  FLAP   IC+ R
Sbjct: 1064 RPLAKHLLESQYFPPSVRSAYMFLAPLQLICTPR 1097


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 438 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 310
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 386 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 484
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,708,477
Number of Sequences: 37544
Number of extensions: 482085
Number of successful extensions: 1197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)