BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30268 (803 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 93 2e-19 SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_59295| Best HMM Match : SET (HMM E-Value=0) 30 2.5 SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40) 29 4.4 SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8 >SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) Length = 379 Score = 93.5 bits (222), Expect = 2e-19 Identities = 39/86 (45%), Positives = 59/86 (68%) Frame = +2 Query: 242 KGFWRLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 421 K F L +K+ DYG++ +EKW TDN L+++IT++D+IA GLK+ + TFAP TG K+ Sbjct: 149 KVFGSLETKYKYSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSA 208 Query: 422 KLKTSFTNDTVAVNTNLDLDLAGPVV 499 K+KT++ D + ++D D AGP V Sbjct: 209 KIKTAYKQDYLHATGDVDFDFAGPTV 234 Score = 67.3 bits (157), Expect = 1e-11 Identities = 27/61 (44%), Positives = 41/61 (67%) Frame = +1 Query: 511 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKL 690 V+ Y+GW AG +DT K+K NNF+LGY++ DF +H+ V++ F GSIY ++S L Sbjct: 239 VVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNL 298 Query: 691 D 693 + Sbjct: 299 E 299 Score = 66.9 bits (156), Expect = 2e-11 Identities = 30/54 (55%), Positives = 40/54 (74%) Frame = +3 Query: 96 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGA 257 P Y DLGK+A DVF KGY FG K+DLKT +++GVEF + +S ++GKVFG+ Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGS 153 >SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2492 Score = 30.3 bits (65), Expect = 1.9 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +1 Query: 508 TVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDK 687 T+ +Y G + V + DT++ K K ALG + + G S+ +S+ Sbjct: 747 TISSYSGSFSSVGEEHDTREVKAPKPLSALGRPGAPWPGKPGDETSTSSGSSVLAAISNH 806 Query: 688 LDCGVT*SGRRARLT 732 + G T S + LT Sbjct: 807 KNSGSTSSATESSLT 821 >SB_59295| Best HMM Match : SET (HMM E-Value=0) Length = 1230 Score = 29.9 bits (64), Expect = 2.5 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +2 Query: 311 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 460 +TD N L +D + +DK K E T + TGKL+T + DT+ + Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859 >SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40) Length = 440 Score = 29.1 bits (62), Expect = 4.4 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -3 Query: 729 QPSPPSTS-CDAAVQLVRYLLVD*TAEIFTIVYVSVESKVTRLVT*SKVVLGEL 571 +P PP S CD +VQ VR L ++F Y S K+T VT +++ L Sbjct: 150 KPRPPGESRCDCSVQKVRKSLRQRVWDLFENPYNSSLGKITYAVTGIAIIVSIL 203 >SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1717 Score = 28.7 bits (61), Expect = 5.8 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +1 Query: 613 DFALHTNVDNGKDFGGSIYQKV 678 ++ +H ++ G+D+GGS YQ+V Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,656,592 Number of Sequences: 59808 Number of extensions: 543506 Number of successful extensions: 1371 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1370 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2227723674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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