Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30268
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    79   5e-15
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    29   3.9  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 44/124 (35%), Positives = 67/124 (54%)
 Frame = +2

Query: 170 TRPEDQERVWC*IHQRDHLQPGKRKGFWRLSSKFAVKDYGLTFTEKWNTDNTLATDITIQ 349
           TR  D + V        ++  GK  G   L  K+ +  YG+T TEKWNT+N L T I + 
Sbjct: 32  TRAGDNKEVEFKSAASHNIGSGKLGG--NLDVKYKIPQYGITLTEKWNTENQLGTVIEVN 89

Query: 350 DKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAQY*TTRV 529
           ++   GLKVTL+  +AP  G ++GK+K  +   T  V  ++ +  A PV++ A    +R 
Sbjct: 90  EQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSA-PVINAAGV-FSRD 147

Query: 530 GWLV 541
           GWL+
Sbjct: 148 GWLI 151



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
 Frame = +3

Query: 90  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFG 254
           MAPP +ADLGK A D+F+KGY+FG  K+D  T++     VEF S  + N  SGK+ G
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGG 57



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +1

Query: 511 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKL 690
           V +  GWL G    FD+   K +  + A G+ +  + LH+ V N  DFG S+Y KV+  +
Sbjct: 143 VFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNV 202

Query: 691 DCG 699
           + G
Sbjct: 203 EVG 205


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 284 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND-TVAV 460
           Y  TFT  W+T++T+ T    QD   + +  T E T A  +      + T  T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518

Query: 461 NTNLDLD 481
            +++  D
Sbjct: 519 VSSVPPD 525


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 218  DHLQPGKRKGFWRLSSKFAVKDYGLTFTEKWNTDNTLATD 337
            D     K       S K+ V  +G T  EKWN D  + TD
Sbjct: 1055 DRKHSSKSNSAGNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 218  DHLQPGKRKGFWRLSSKFAVKDYGLTFTEKWNTDNTLATD 337
            D     K       S K+ V  +G T  EKWN D  + TD
Sbjct: 1055 DRKHSSKSNSAGNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,770,615
Number of Sequences: 27780
Number of extensions: 396833
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)