Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30268
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    34   0.13 
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    33   0.29 
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.51 
At5g39020.1 68418.m04722 protein kinase family protein contains ...    29   3.6  
At3g30210.1 68416.m03811 myb family transcription factor (MYB121...    29   3.6  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   6.3  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 93  APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 215
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA 43


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 96  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 215
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS 43


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 96  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 230
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At5g39020.1 68418.m04722 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 813

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 239 RKGFWRLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKV----TLEGTFAP 400
           + GF  ++S F+VK  G T    +N D+T+   I + + +     +    TL  TF P
Sbjct: 113 KSGFDAVNSFFSVKVNGFTLLRNFNADSTVQASIPLSNSLIKEFIIPVHQTLNLTFTP 170


>At3g30210.1 68416.m03811 myb family transcription factor (MYB121)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain (2 copies)
          Length = 276

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 206 IHQRDHLQPGKRKGFWRLSSKFAVKDYGLTFTE-KWNT 316
           I+Q+ H Q G RKG W L     + +Y  +  E +W+T
Sbjct: 17  IYQQQHQQQGCRKGPWTLEEDKLLAEYVTSHGEGRWST 54


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 84  TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGA 257
           T ++ P  ++ G+ A  +  K  +FG   LDL  K   +SG+  +S ITS   SGK    
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGKTTEV 325

Query: 258 FP 263
            P
Sbjct: 326 TP 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,929,480
Number of Sequences: 28952
Number of extensions: 378890
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)